Browse Element(s) Details


Os.10853.1.S1_at

Description gb:AK071108.1
DB_XREF= gi:32981131
TID=Os.10853.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078B21, full insert sequence.
FL= gb:AK071108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3993011/11Outer membrane lipoprotein blc precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39910Os.27139.2.S1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910Os.27139.1.A1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910OsAffx.1564.1.A1_x_at2/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10853.1.S1_at--53--1731Chr02:24146798..24146822 (25 bp)
ACCAGCAGCGGGAAGCGCGACTACA
LOC_Os02g39930
Os.10853.1.S1_at--87--4611Chr02:24146782..24146806 (25 bp)
GCGACTACATCAAGGGCACCGCCTA
LOC_Os02g39930
Os.10853.1.S1_at--284--5791Chr02:24146651..24146675 (25 bp)
GACGACGACTACCAGTACGCGCTCG
LOC_Os02g39930
Os.10853.1.S1_at--570--2911Chr02:24146609..24146633 (25 bp)
AAGGACCTGTGGATCCTGTGCCGGC
LOC_Os02g39930
Os.10853.1.S1_at--865--9271Chr02:24146596..24146620 (25 bp)
TCCTGTGCCGGCAGACGAGCATGGA
LOC_Os02g39930
Os.10853.1.S1_at--678--5751Chr02:24146445..24146469 (25 bp)
GACGTGGTGGTTCAAGTCGCTCTTC
LOC_Os02g39930
Os.10853.1.S1_at--953--5971Chr02:24146409..24146433 (25 bp)
GAGAAATTCTCAGCGGCCGATGGAT
LOC_Os02g39930
Os.10853.1.S1_at--124--6191Chr02:24146378..24146402 (25 bp)
GAGGACGACGATGTATAGCTATAGT
LOC_Os02g39930
Os.10853.1.S1_at--768--5211Chr02:24146351..24146375 (25 bp)
GAATTTGCCTTCAGTAGCAGTGGAG
LOC_Os02g39930
Os.10853.1.S1_at--640--8671Chr02:24146285..24146309 (25 bp)
TGTGTGTTTGTAATGCTGTGCTTTA
LOC_Os02g39930
Os.10853.1.S1_at--247--8531Chr02:24146250..24146274 (25 bp)
TGGAAATGAACTCTTACACGTGCTT
LOC_Os02g39930
Target Sequence 
ACCAGCAGCGGGAAGCGCGACTACATCAAGGGCACCGCCTACAAGGCCGACCCGGCCAGCGACGAGGCCAAGCTCAAGGT
CAAGTTCTACCTGCCCCCCTTCCTCCCCGTCATCCCCGTCGTCGGCGACTACTGGGTGCTCTACGTCGACGACGACTACC
AGTACGCGCTCGTCGGCGAGCCGCGGCGCAAGGACCTGTGGATCCTGTGCCGGCAGACGAGCATGGACGACGAGGTGTAC
GGGCGGCTGCTGGAGAAGGCCAAGGAGGAAGGGTACGACGTCGAGAAGCTGCGCAAGACGCCGCAGGACGACCCGCCGCC
GGAGAGCGACGCCGCGCCCACCGACACCAAGGGGACGTGGTGGTTCAAGTCGCTCTTCGGCAAATGATCGAGAAATTCTC
AGCGGCCGATGGATGGATCAGAGGACGACGATGTATAGCTATAGTATGAATTTGCCTTCAGTAGCAGTGGAGAATAAAAT
GGACTTTTGGTGTGAGTGTGTTCTTGAGGTGATTGTGTGTTTGTAATGCTGTGCTTTACAGGAATTAATGGAAATGAACT
CTTACACGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis