Browse Element(s) Details


Os.17981.1.S1_at

Description gb:AK060629.1
DB_XREF= gi:32970647
TID=Os.17981.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H10, full insert sequence.
FL= gb:AK060629.1 gb:AK072455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3992011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39910Os.27139.2.S1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910Os.27139.1.A1_at11/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39910OsAffx.1564.1.A1_x_at2/112+24128806..24130576K+ channel tetramerisation domain containing protein, expressed
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17981.1.S1_at--406--10071Chr02:24134364..24134388 (25 bp)
TAGGGATCCGCTGGTGGCGCTTCTA
LOC_Os02g39920
Os.17981.1.S1_at--1034--5271Chr02:24134317..24134341 (25 bp)
GAAGGCTTGAAGTTACCCGCTAATT
LOC_Os02g39920
Os.17981.1.S1_at--670--1791Chr02:24134303..24134327 (25 bp)
ACCCGCTAATTTCTCTTGTACATGG
LOC_Os02g39920
Os.17981.1.S1_at--305--831Chr02:24134282..24134306 (25 bp)
ATGGATTCGCTCTCTAGACTCAAAA
LOC_Os02g39920
Os.17981.1.S1_at--817--7891Chr02:24134257..24134281 (25 bp)
GGTTCGCTTAGTCTCAAAAGGTGTT
LOC_Os02g39920
Os.17981.1.S1_at--867--2511Chr02:24134230..24134254 (25 bp)
AACATTGCACCCTGTGTGGTTGTAA
LOC_Os02g39920
Os.17981.1.S1_at--509--7171Chr02:24134198..24134222 (25 bp)
GTCGGGTGACCTATTGGAATGCCAA
LOC_Os02g39920
Os.17981.1.S1_at--257--4591Chr02:24134103..24134127 (25 bp)
GCGCAAGTGCGCAACTTTTAATGGT
LOC_Os02g39920
Os.17981.1.S1_at--15--4491Chr02:24133937..24133961 (25 bp)
GCCTGGCACCATTAAGAAATCCTGT
LOC_Os02g39920
Os.17981.1.S1_at--402--5591Chr02:24133922..24133946 (25 bp)
GAAATCCTGTTTTTCAGAGCTCATA
LOC_Os02g39920
Os.17981.1.S1_at--448--5911Chr02:24133906..24133930 (25 bp)
GAGCTCATATTCCTCTGCGAGTAGA
LOC_Os02g39920
Target Sequence 
TAGGGATCCGCTGGTGGCGCTTCTACTGGAGAAAAGAAGCGCAGAAGGAAGGCTTGAAGTTACCCGCTAATTTCTCTTGT
ACATGGATTCGCTCTCTAGACTCAAAAGGTTCGCTTAGTCTCAAAAGGTGTTAAAACATTGCACCCTGTGTGGTTGTAAC
TCTTCGGTCGGGTGACCTATTGGAATGCCAACTGATTGGGCATGTAGCGGTTTTAACTAGGGGTTGTAGACAAGATAAAA
ATGCTGTAGTTGTGATGTTAGGCGCAAGTGCGCAACTTTTAATGGTTGGTTGAACCCCATGCNTGCCAAGAGGCCAATGA
CATCATAGTTGTGTCGGATGATGTTGTAGCTAGCCTGTTGATGTCTTATTTANTTAGGCCATATGAGCAAATGAGTTTTG
TAGCTAATGTGCCGGTCTGTCAGCCCTGCCTGGCACCATTAAGAAATCCTGTTTTTCAGAGCTCATATTCCTCTGCGAGT
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis