Browse Element(s) Details


Os.52006.1.S1_at

Description gb:AK064522.1
DB_XREF= gi:32974540
TID=Os.52006.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G01, full insert sequence.
FL= gb:AK064522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2178011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein
LOC_Os09g21800OsAffx.17836.1.S1_at10/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800OsAffx.2922.1.S1_at2/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.50253.2.S1_x_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.22699.1.S1_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21810OsAffx.17837.1.S1_at9/119+13215138..13220757hypothetical protein
LOC_Os09g21810OsAffx.6362.1.S1_at3/119+13215138..13220757hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52006.1.S1_at--742--6391Chr09:13185854..13185878 (25 bp)
GATCGTGTTTTGCTGAACCGAGCAC
LOC_Os09g21780
Os.52006.1.S1_at--1104--7711Chr09:13185175..13185199 (25 bp)
GGGTGGCCAACTACTGTCTTAAATT
LOC_Os09g21780
Os.52006.1.S1_at--636--2631Chr09:13184565..13184589 (25 bp)
AACCTCGTAAAGCAACTCCACATGG
LOC_Os09g21780
Os.52006.1.S1_at--952--4331Chr09:13184534..13184558 (25 bp)
CCAGAAGAACGCTTGCCATATCCAC
LOC_Os09g21780
Os.52006.1.S1_at--640--251Chr09:13184517..13184541 (25 bp)
ATATCCACGGCAGGCGACGACTAAG
LOC_Os09g21780
Os.52006.1.S1_at--1146--4711Chr09:13184489..13184513 (25 bp)
GCTGGTCGTTATCTCTGCTGTTTGA
LOC_Os09g21780
Os.52006.1.S1_at--834--7671Chr09:13184435..13184459 (25 bp)
GGGTTTTACGCCAGCATATCTGCTT
LOC_Os09g21780
Os.52006.1.S1_at--682--6491Chr09:13184410..13184434 (25 bp)
GATAGCTTTGTACCATAGCCTGTGA
LOC_Os09g21780
Os.52006.1.S1_at--669--8711Chr09:13184331..13184355 (25 bp)
TGTCGCCATTCTTTCTGATTATTTT
LOC_Os09g21780
Os.52006.1.S1_at--1042--9191Chr09:13184299..13184323 (25 bp)
TGCCATATGCTGTACAAATTGCTCT
LOC_Os09g21780
Os.52006.1.S1_at--1157--2231Chr09:13184284..13184308 (25 bp)
AAATTGCTCTTAACGGTTGCTGATT
LOC_Os09g21780
Target Sequence 
GATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAGGGTGGCCAACTACTGTCTTAAATTAGCTGG
TGAACAAGAAAAGATGGTATCAGAAAGGTGGTTGCCAGAACTGAGAAACGCAGTTCAAGAGGCTCAAAGGTGTTTTGAGG
ATTGCCGACGTGTTAGGGGTTTGGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAATAGAC
GGGCAAAGCGTTGGTGCCTGGATCAACCTCGTAAAGCAACTCCACATGGAAATCTCCAGAAGAACGCTTGCCATATCCAC
GGCAGGCGACGACTAAGGCAGCTGGTCGTTATCTCTGCTGTTTGATTTTTTATTTTTAGAGGCTTGATTGGTTGGGGTTT
TACGCCAGCATATCTGCTTGATAGCTTTGTACCATAGCCTGTGATGTAATTGTAAAANCTTGGTTTGTTTATTAGTTTAG
TATATGTTCTTTTATATATGTCGCCATTCTTTCTGATTATTTTTGTTATTTGCCATATGCTGTACAAATTGCTCTTAACG
GTTGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis