Browse Element(s) Details


OsAffx.29968.1.S1_s_at

Description tigr:9637.m01880
TID=OsAffx.29968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2174011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29968.1.S1_s_at--955--8211Chr09:13163517..13163541 (25 bp)
GGCAACACGGCCGAATTCTAAACCA
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--807--7451Chr09:13163475..13163499 (25 bp)
GTGTGATTGATTGATTCCACCGAAT
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--405--9211Chr09:13163460..13163484 (25 bp)
TCCACCGAATACCTAGTACACCATT
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--455--9951Chr09:13163415..13163439 (25 bp)
TACGCGGATTGCGACAGCTGCCATC
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--987--4791Chr09:13163343..13163367 (25 bp)
GCTCCCATGTGTAGTGCACTTTGTG
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--473--9031Chr09:13163329..13163353 (25 bp)
TGCACTTTGTGCTCGGATGTGTAAA
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--281--7051Chr09:13163309..13163333 (25 bp)
GTAAAGTTGACAGGGCTCGCGACGC
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--306--7731Chr09:13163274..13163298 (25 bp)
GGTGTTGCTTGCAAGCCAGAGTAAT
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--113--8291Chr09:13163249..13163273 (25 bp)
GGCATTGTTCTGTGTGTACTTTCCA
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--640--7471Chr09:13163238..13163262 (25 bp)
GTGTGTACTTTCCAAACTTAGGCAT
LOC_Os09g21740
OsAffx.29968.1.S1_s_at--1122--5791Chr09:13163199..13163223 (25 bp)
GACGCATGTGTCTGAAATTCTTCTG
LOC_Os09g21740
Target Sequence 
GGCAACACGGCCGAATTCTAAACCACCACCACCACCACCACCGTGTGATTGATTGATTCCACCGAATACCTAGTACACCA
TTAGACAGTTGAGGCAATTAGGTACGCGGATTGCGACAGCTGCCATCGCTGGTCGACGCCGGCGAGGTCGCCATGGCGGC
GGCGGCGCCGGCGAGCTCCCATGTGTAGTGCACTTTGTGCTCGGATGTGTAAAGTTGACAGGGCTCGCGACGCGCGTGTG
GCGGGTGTTGCTTGCAAGCCAGAGTAATGGCATTGTTCTGTGTGTACTTTCCAAACTTAGGCATTGTTCAGGAAGAAAGA
CGCATGTGTCTGAAATTCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29968.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis