Browse Element(s) Details


OsAffx.17833.1.S1_at

Description tigr:9637.m01875
TID=OsAffx.17833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2170011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21670OsAffx.6359.1.S1_s_at11/119+13125139..13128804expressed protein
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17833.1.S1_at--257--5691Chr09:13150457..13150481 (25 bp)
GACTTGCCACGTATTCGGGTATCAC
LOC_Os09g21700
OsAffx.17833.1.S1_at--840--7791Chr09:13150419..13150443 (25 bp)
GGTCCTCCATAACGGCTTGCTATAT
LOC_Os09g21700
OsAffx.17833.1.S1_at--514--1011Chr09:13150376..13150400 (25 bp)
AGGTTGCTGGTCTATGATCCTTGCA
LOC_Os09g21700
OsAffx.17833.1.S1_at--1074--2611Chr09:13150322..13150346 (25 bp)
AAGCCTGACGGCTTTGGGTTCAAAT
LOC_Os09g21700
OsAffx.17833.1.S1_at--524--6631Chr09:13150253..13150277 (25 bp)
GTTGTACTCATTGAACGCCGTGGGA
LOC_Os09g21700
OsAffx.17833.1.S1_at--837--891Chr09:13150228..13150252 (25 bp)
AGGCGGTCCATGTTTTGAAGCTTAA
LOC_Os09g21700
OsAffx.17833.1.S1_at--592--5871Chr09:13150173..13150197 (25 bp)
GAGCCTGCATGGTCAAGTAGTGTTC
LOC_Os09g21700
OsAffx.17833.1.S1_at--633--1191Chr09:13150158..13150182 (25 bp)
AGTAGTGTTCACTGGGTCGCTGACA
LOC_Os09g21700
OsAffx.17833.1.S1_at--1072--6151Chr09:13150080..13150104 (25 bp)
GAGGTTCTACAATTGGCCTGAGACA
LOC_Os09g21700
OsAffx.17833.1.S1_at--497--711Chr09:13150051..13150075 (25 bp)
ATGTTGATCTTGTCACTCGCGAAGG
LOC_Os09g21700
OsAffx.17833.1.S1_at--686--8751Chr09:13150014..13150038 (25 bp)
TGTACCAAAGTCATCGTCCTACTCA
LOC_Os09g21700
Target Sequence 
GACTTGCCACGTATTCGGGTATCACCGGACACCAACCCGGTCCTCCATAACGGCTTGCTATATCTTCTAGCTCAAGATGG
GAGGTTGCTGGTCTATGATCCTTGCAGGCATGACAATGGATTTGAGATTCTTGACAAGCCTGACGGCTTTGGGTTCAAAT
GTGAAGATAGCTACTTGCTCCGGTCCAGCCAATATGGGTTGATGGTTGTACTCATTGAACGCCGTGGGAAGGCGGTCCAT
GTTTTGAAGCTTAATGAGGAAACAATGGAGTGGGAGAAGGTGGAGAGCCTGCATGGTCAAGTAGTGTTCACTGGGTCGCT
GACAACGATAATAAAGAAGCCCAAATTTAAGTGGATGGAGAACAAAGTTTTCCTCCCGAGGTTCTACAATTGGCCTGAGA
CAATTCATGTTGATCTTGTCACTCGCGAAGGGGAAATGGCCTTTGTACCAAAGTCATCGTCCTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis