Browse Element(s) Details


Os.17051.1.S1_at

Description gb:AK063271.1
DB_XREF= gi:32973289
TID=Os.17051.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B11, full insert sequence.
FL= gb:AK063271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g217608/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17051.1.S1_at--414--8031Chr09:13175212..13175233 (22 bp)
GGAGAGGTACAATCTGCTTGAGTAT
LOC_Os09g21760
Os.17051.1.S1_at--509--651Chr09:13174186..13174210 (25 bp)
ATGCAGATGTTGTGACCTCACTTAA
LOC_Os09g21760
Os.17051.1.S1_at--116--491Chr09:13174022..13174046 (25 bp)
ATCTGGTGTCTACCTTGTATTGGAG
LOC_Os09g21760
Os.17051.1.S1_at--1022--5411Chr09:13173554..13173578 (25 bp)
GAAGCCTGTCTAGTTCATAGTCGCC
LOC_Os09g21760
Os.17051.1.S1_at--772--3551Chr09:13173539..13173563 (25 bp)
CATAGTCGCCCCTGAAAAGAATTAA
LOC_Os09g21760
Os.17051.1.S1_at--1050--10151Chr09:13173513..13173537 (25 bp)
TATCTCCTATTCTGTTGTATTCGGC
LOC_Os09g21760
Os.17051.1.S1_at--720--8811Chr09:13173501..13173525 (25 bp)
TGTTGTATTCGGCACATGTTTTTGT
LOC_Os09g21760
Os.17051.1.S1_at--380--1891Chr09:13173473..13173497 (25 bp)
ACGTTGAAAAACTATTGCCTGACAG
LOC_Os09g21760
Os.17051.1.S1_at--192--3351Chr09:13173429..13173450 (22 bp)
CACGTGGTGTTTGTACTAGTGTAAC
NONE
Os.17051.1.S1_at--846--6591NONE
TAGTGTAACCAAGAGACCCTTTCGC
NONE
Os.17051.1.S1_at--709--10291NONE
TTTCGCCCGGTAATAAATGACACTT
NONE
Target Sequence 
GGAGAGGTACAATCTGCTTGAGTATGCAGATGTTGTGACCTCACTTAAGAGAGGAGATCTCAGNCTTCTTAGGCANNCNC
TCGAAAGGCATGAAGACCNATTCTTAAAATCTGGTGTCTACCTTGTATTGGAGAAGCTTGAACTTCAAGTCTATCNAGAG
ATTAGTTAAGAAAATCCATATCATTCAGAGNCAGAAGGAGCCNGCCNAGGCACATCNAATTAAGCTAGAAGTCGTTGTAA
AAGCTTTGAAATGGCTTGAAATTGACANTGGACGTGGATGAGGTGGAGTGCATCANTGGCGTGCCTAATATACNAGAATC
TCNTTAAAGGATACTTTGCTCATAAGAGCNAAGTTCTTGTCCTCAGCNAACNAGATCCTTTCCCNAAGTTGAATGGGAAG
CCTGTCTAGTTCATAGTCGCCCCTGAAAAGAATTAACTATCTCCTATTCTGTTGTATTCGGCACATGTTTTTGTAAAACG
TTGAAAAACTATTGCCTGACAGTAACATTTGTATTATTGTAACACGTGGTGTTTGTACTAGTGTAACCAAGAGACCCTTT
CGCCCGGTAATAAATGACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis