Browse Element(s) Details


OsAffx.17835.1.S1_at

Description tigr:9637.m01879
TID=OsAffx.17835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2173010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17835.1.S1_at--942--10011NONE
TAGCAGCTCCTCAGAAATTCAAGAT
NONE
OsAffx.17835.1.S1_at--309--131Chr09:13162545..13162569 (25 bp)
ATTCAAGATTCTTCGGCCTTCGGAG
LOC_Os09g21730
OsAffx.17835.1.S1_at--621--1251Chr09:13162550..13162574 (25 bp)
AGATTCTTCGGCCTTCGGAGCAATG
LOC_Os09g21730
OsAffx.17835.1.S1_at--1054--9431Chr09:13162564..13162588 (25 bp)
TCGGAGCAATGCGTCACAGCGTCAG
LOC_Os09g21730
OsAffx.17835.1.S1_at--640--611Chr09:13162572..13162596 (25 bp)
ATGCGTCACAGCGTCAGTGAGAAAA
LOC_Os09g21730
OsAffx.17835.1.S1_at--616--5511Chr09:13162592..13162616 (25 bp)
GAAAAGGGTCTGTGTCTTATGACAT
LOC_Os09g21730
OsAffx.17835.1.S1_at--294--7451Chr09:13162603..13162627 (25 bp)
GTGTCTTATGACATGGGCAACATCC
LOC_Os09g21730
OsAffx.17835.1.S1_at--893--5651Chr09:13162612..13162636 (25 bp)
GACATGGGCAACATCCAGGAATCAA
LOC_Os09g21730
OsAffx.17835.1.S1_at--1046--3051Chr09:13162631..13162655 (25 bp)
AATCAAGTGGTACACGGGAGACCGT
LOC_Os09g21730
OsAffx.17835.1.S1_at--611--8291Chr09:13162670..13162694 (25 bp)
GGCTTGCATATGACCCTACAGGAAA
LOC_Os09g21730
OsAffx.17835.1.S1_at--662--6951Chr09:13162696..13162720 (25 bp)
GTAGACCATACTGTACTACCTTTGG
LOC_Os09g21730
Target Sequence 
TAGCAGCTCCTCAGAAATTCAAGATTCTTCGGCCTTCGGAGCAATGCGTCACAGCGTCAGTGAGAAAAGGGTCTGTGTCT
TATGACATGGGCAACATCCAGGAATCAAGTGGTACACGGGAGACCGTGGAGAAAAGGGTCAGGCTTGCATATGACCCTAC
AGGAAATGTAGACCATACTGTACTACCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis