Browse Element(s) Details


OsAffx.17832.1.S1_at

Description tigr:9637.m01874
TID=OsAffx.17832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2169010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21660Os.52013.1.S1_at10/119+13115491..13117743expressed protein
LOC_Os09g21670OsAffx.6359.1.S1_s_at11/119+13125139..13128804expressed protein
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17832.1.S1_at--559--891Chr09:13139099..13139123 (25 bp)
AGGCGATGAAAGACCGCAAGAAGAA
LOC_Os09g21690
OsAffx.17832.1.S1_at--403--7791Chr09:13139184..13139208 (25 bp)
GGTGCGCGAGGGTAACCGCCACTTC
LOC_Os09g21690
OsAffx.17832.1.S1_at--115--11Chr09:13139192..13139216 (25 bp)
AGGGTAACCGCCACTTCGAGGAGTG
LOC_Os09g21690
OsAffx.17832.1.S1_at--1034--2611Chr09:13139197..13139221 (25 bp)
AACCGCCACTTCGAGGAGTGCGAGG
LOC_Os09g21690
OsAffx.17832.1.S1_at--1039--4371Chr09:13139279..13139303 (25 bp)
GCCAAGAGGAGCTCGTGGGATCCAA
LOC_Os09g21690
OsAffx.17832.1.S1_at--248--4811Chr09:13139289..13139313 (25 bp)
GCTCGTGGGATCCAAAAAGGCCGCC
LOC_Os09g21690
OsAffx.17832.1.S1_at--626--4511NONE
GCCCCACCGAAGGAAGCCAATAGTG
NONE
OsAffx.17832.1.S1_at--65--2691Chr09:13141566..13141588 (23 bp)
GAAGCCAATAGTGAACCAGACGTTA
LOC_Os09g21690
OsAffx.17832.1.S1_at--758--4351Chr09:13141579..13141603 (25 bp)
CCAGACGTTATAATAGTGCTTCACA
LOC_Os09g21690
OsAffx.17832.1.S1_at--1041--1111Chr09:13141593..13141617 (25 bp)
AGTGCTTCACACTGGTCTTGAGGGC
LOC_Os09g21690
OsAffx.17832.1.S1_at--585--2171Chr09:13141601..13141625 (25 bp)
ACACTGGTCTTGAGGGCACGGCTAT
LOC_Os09g21690
Target Sequence 
AGGCGATGAAAGACCGCAAGAAGAAGAAGGGCCCCACCAAGCCCACCCCATGGAAGTGCCCCCTCTGCCACGAGCTCTTC
CTCGGGGTGCGCGAGGGTAACCGCCACTTCGAGGAGTGCGAGGCGGCGACCAAGGCCGCGCGCGCCGCCGACCAGAGGAA
GATGGACGTGGAACGCGCTCGCCAAGAGGAGCTCGTGGGATCCAAAAAGGCCGCCCCACCGAAGGAAGCCAATAGTGAAC
CAGACGTTATAATAGTGCTTCACACTGGTCTTGAGGGCACGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis