Browse Element(s) Details


Os.20221.1.S1_at

Description gb:AK065210.1
DB_XREF= gi:32975228
TID=Os.20221.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F20, full insert sequence.
FL= gb:AK065210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2171011/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20221.1.S1_at--823--3951Chr09:13154420..13154444 (25 bp)
CGGTGCAAGGAGACGCTCACGTTCT
LOC_Os09g21710
Os.20221.1.S1_at--1142--6711Chr09:13154400..13154424 (25 bp)
GTTCTCCAACACGAGCGGGTGCAAG
LOC_Os09g21710
Os.20221.1.S1_at--821--9131Chr09:13154372..13154396 (25 bp)
TGCGGCCAGAAGGTGTGCCTCAAGC
LOC_Os09g21710
Os.20221.1.S1_at--792--1451Chr09:13154365..13154389 (25 bp)
AGAAGGTGTGCCTCAAGCACCGGTT
LOC_Os09g21710
Os.20221.1.S1_at--379--2691Chr09:13154213..13154237 (25 bp)
AAGCTGCCGCAATCGGTGAGGAACA
LOC_Os09g21710
Os.20221.1.S1_at--1031--10271Chr09:13154181..13154205 (25 bp)
TTTCTGACTTGTCACGCCACGGTCG
LOC_Os09g21710
Os.20221.1.S1_at--212--4151Chr09:13154143..13154167 (25 bp)
CGCGCCGCGGTTTCTTTCGTAGGAG
LOC_Os09g21710
Os.20221.1.S1_at--907--6811Chr09:13154134..13154158 (25 bp)
GTTTCTTTCGTAGGAGGACAAGCAA
LOC_Os09g21710
Os.20221.1.S1_at--864--4491Chr09:13154090..13154114 (25 bp)
GCCGAGGAGGCATTTGATCTGTCCA
LOC_Os09g21710
Os.20221.1.S1_at--393--8291Chr09:13154082..13154106 (25 bp)
GGCATTTGATCTGTCCAATGATTTT
LOC_Os09g21710
Os.20221.1.S1_at--54--6271Chr09:13154030..13154054 (25 bp)
GATGTCTTTTTCGAATGAATTCTGC
LOC_Os09g21710
Target Sequence 
CGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGGTGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTT
CCCCGCCGACCACGCGTGCGCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGCG
CCGGGCAGTGCGGGCGCGACGCGCAGAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATT
TTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGC
CAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTT
TCGAATGAATTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis