Browse Element(s) Details


OsAffx.6360.1.S1_at

Description tigr:9637.m01881
TID=OsAffx.6360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein
LOC_Os09g21710Os.20221.1.S1_at11/119+13153949..13154831AN1-like Zinc finger family protein, expressed
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6360.1.S1_at--45--8651Chr09:13170050..13170074 (25 bp)
TGGGAGATTGGGAGCATGCATTCTT
LOC_Os09g21750
OsAffx.6360.1.S1_at--485--5931Chr09:13170039..13170063 (25 bp)
GAGCATGCATTCTTGTGTCCTTTGC
LOC_Os09g21750
OsAffx.6360.1.S1_at--446--4631Chr09:13170016..13170040 (25 bp)
GCGTTTGTTCCAAGAACGTCGGATC
LOC_Os09g21750
OsAffx.6360.1.S1_at--423--411Chr09:13169994..13170018 (25 bp)
ATCATGGGCATGCATCAAGATGAGG
LOC_Os09g21750
OsAffx.6360.1.S1_at--628--3231Chr09:13169979..13170003 (25 bp)
CAAGATGAGGCCACTCTTTGCAATT
LOC_Os09g21750
OsAffx.6360.1.S1_at--558--8731Chr09:13169341..13169365 (25 bp)
TGTCACAATACACCCAGATCAATAG
LOC_Os09g21750
OsAffx.6360.1.S1_at--970--6451Chr09:13169325..13169349 (25 bp)
GATCAATAGATCACCATACCGGATG
LOC_Os09g21750
OsAffx.6360.1.S1_at--920--291Chr09:13169310..13169334 (25 bp)
ATACCGGATGTTTCTCTTGGCCCAC
LOC_Os09g21750
OsAffx.6360.1.S1_at--636--10871Chr09:13169294..13169318 (25 bp)
TTGGCCCACACACGTACGTTCAATT
LOC_Os09g21750
OsAffx.6360.1.S1_at--245--2031Chr09:13169286..13169310 (25 bp)
CACACGTACGTTCAATTTAGGGACT
LOC_Os09g21750
OsAffx.6360.1.S1_at--1084--2071Chr09:13169168..13169192 (25 bp)
ACATGTGGAGCCAGAGGGTGTACCT
LOC_Os09g21750
Target Sequence 
TGGGAGATTGGGAGCATGCATTCTTGTGTCCTTTGCGTTTGTTCCAAGAACGTCGGATCATGGGCATGCATCAAGATGAG
GCCACTCTTTGCAATTGGGGCGCTTGAAGTGTCACAATACACCCAGATCAATAGATCACCATACCGGATGTTTCTCTTGG
CCCACACACGTACGTTCAATTTAGGGACTAGTAATAGCATTGAACAGAAGAACATGAGGGGGGGTATTGGAGTACTCAAC
AAAGGAGAAAGAAAACATGTGGAGCCAGAGGGTGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis