Browse Element(s) Details


Os.12947.1.S1_at

Description gb:AK064072.1
DB_XREF= gi:32974090
TID=Os.12947.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G12, full insert sequence.
FL= gb:AK099307.1 gb:AK064072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2177011/11receptor like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21720NANA9+13157642..13158235hypothetical protein
LOC_Os09g21730OsAffx.17835.1.S1_at10/119+13160352..13162773hypothetical protein
LOC_Os09g21740OsAffx.29968.1.S1_s_at11/119+13163121..13164990U-box domain containing protein, expressed
LOC_Os09g21750OsAffx.6360.1.S1_at11/119+13169096..13170138hypothetical protein
LOC_Os09g21760Os.17051.1.S1_at8/119+13173452..13177149PCI domain containing protein, expressed
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein
LOC_Os09g21800OsAffx.17836.1.S1_at10/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800OsAffx.2922.1.S1_at2/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.50253.2.S1_x_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.22699.1.S1_at1/119+13202517..13209927F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009791biological_processpost-embryonic development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0042156molecular_functionzinc-mediated transcriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12947.1.S1_at--109--6011Chr09:13182549..13182573 (25 bp)
GAGACCTTCAAATTCATATCCAGCA
LOC_Os09g21770
Os.12947.1.S1_at--115--991Chr09:13183365..13183389 (25 bp)
AGGAGATGCACTGTTTATGGCGTCA
LOC_Os09g21770
Os.12947.1.S1_at--249--7111Chr09:13183386..13183410 (25 bp)
GTCAGCTCTTCATTGCTGGTGCAAA
LOC_Os09g21770
Os.12947.1.S1_at--494--8311Chr09:13183450..13183474 (25 bp)
GGCTAGGTCCAAGATCGCGTTAACT
LOC_Os09g21770
Os.12947.1.S1_at--835--4611Chr09:13183466..13183490 (25 bp)
GCGTTAACTTATCATTTGCCCGAAT
LOC_Os09g21770
Os.12947.1.S1_at--460--8171Chr09:13183494..13183518 (25 bp)
GGAACGTTTCCATCAGTCTAGGCAA
LOC_Os09g21770
Os.12947.1.S1_at--137--3611Chr09:13183531..13183555 (25 bp)
CATTGATGCTGTTGGCTCGTTCAGT
LOC_Os09g21770
Os.12947.1.S1_at--469--3791Chr09:13183546..13183570 (25 bp)
CTCGTTCAGTTGTAGCCAGTGTGGA
LOC_Os09g21770
Os.12947.1.S1_at--1121--10351Chr09:13183590..13183614 (25 bp)
TTTTAGCTTTTTGCCTGGTACAGGA
LOC_Os09g21770
Os.12947.1.S1_at--883--8151Chr09:13183612..13183636 (25 bp)
GGAAAACGTTCCCAGCGTGGATGAT
LOC_Os09g21770
Os.12947.1.S1_at--260--4171Chr09:13183676..13183700 (25 bp)
CCCTGAGTTCTGTGACCTGTTTATT
LOC_Os09g21770
Target Sequence 
GAGACCTTCAAATTCATATCCAGCATCATCAAATTCTGATTCTAAGGTTGAGCCAAAAAAGCGGAAGAGGTAATTGCTGT
GACACGAGCCATCCGTGGTGAGGAGATGCACTGTTTATGGCGTCAGCTCTTCATTGCTGGTGCAAAGTCAAAACGTGGAG
GGTGTACAGTGCAGATGAAGAGCTAGGCTAGGTCCAAGATCGCGTTAACTTATCATTTGCCCGAATTTGGGAACGTTTCC
ATCAGTCTAGGCAAAAGAACGAACTTCATTGATGCTGTTGGCTCGTTCAGTTGTAGCCAGTGTGGACTGGATGAGTGTCA
GCGTGTTTTAGCTTTTTGCCTGGTACAGGAAAACGTTCCCAGCGTGGATGATGTTGATGATAGCTTAACTGTAGTTTCAT
AATTTGGGTGTCCCTGAGTTCTGTGACCTGTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis