Browse Element(s) Details


OsAffx.17836.1.S1_at

Description tigr:9637.m01886
TID=OsAffx.17836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2180010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21770Os.12947.1.S1_at11/119+13180329..13183735receptor like protein, putative, expressed
LOC_Os09g21780Os.52006.1.S1_at11/119+13184206..13190511expressed protein
LOC_Os09g21790OsAffx.6361.1.S1_at11/119+13193833..13194558hypothetical protein
LOC_Os09g21790OsAffx.17849.1.S1_at1/119+13193833..13194558hypothetical protein
LOC_Os09g21800OsAffx.17836.1.S1_at10/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800OsAffx.2922.1.S1_at2/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.50253.2.S1_x_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21800Os.22699.1.S1_at1/119+13202517..13209927F-box domain containing protein
LOC_Os09g21810OsAffx.17837.1.S1_at9/119+13215138..13220757hypothetical protein
LOC_Os09g21810OsAffx.6362.1.S1_at3/119+13215138..13220757hypothetical protein
LOC_Os09g21820Os.45957.4.S1_x_at5/119+13223484..13227710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21830NANA9+13228306..13228713expressed protein
LOC_Os09g21840NANA9+13229087..13233448retrotransposon protein, putative, unclassified
LOC_Os09g21850NANA9+13234205..13238004retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17836.1.S1_at--700--7071Chr09:13205370..13205457 (25 bp)
GTCAATGACCTATTTGTCCTCGACT
LOC_Os09g21800
OsAffx.17836.1.S1_at--76--2211Chr09:13205482..13205506 (25 bp)
ACAACGCTAATGATGCTGGCACCGA
LOC_Os09g21800
OsAffx.17836.1.S1_at--1061--1051NONE
AGGGTCCATCCTAGAATACCTTGCC
NONE
OsAffx.17836.1.S1_at--875--5232Chr09:13207578..13207600 (23 bp)
GAATACCTTGCCCTATCTATGATGT
LOC_Os09g21800
OsAffx.17836.1.S1_at--379--3071Chr09:13209529..13209553 (25 bp)
AATCTTGCAGAGTGCCTGGACTATG
LOC_Os09g21800
OsAffx.17836.1.S1_at--257--3611Chr09:13209611..13209635 (25 bp)
CATTGTGCCGGAAGGATGCCAGTGT
LOC_Os09g21800
OsAffx.17836.1.S1_at--749--3451Chr09:13209630..13209654 (25 bp)
CAGTGTTGTTGGTGCATGCCTGCAT
LOC_Os09g21800
OsAffx.17836.1.S1_at--314--5191Chr09:13209686..13209710 (25 bp)
GCAATGAGCGCGTTGTCCTCGAGAC
LOC_Os09g21800
OsAffx.17836.1.S1_at--952--5971Chr09:13209706..13209730 (25 bp)
GAGACAGACTTCTACACCGCCAGGT
LOC_Os09g21800
OsAffx.17836.1.S1_at--147--9671Chr09:13209752..13209776 (25 bp)
TCACCTCTAACATAATTTCCGGCAC
LOC_Os09g21800
OsAffx.17836.1.S1_at--87--2171Chr09:13209778..13209802 (25 bp)
ACACCTCTAGATCGGCTAGTTTGCG
LOC_Os09g21800
Target Sequence 
GTCAATGACCTATTTGTCCTCGACTTCATTGGCGCCGTCATCCAATATGACAACGCTAATGATGCTGGCACCGAGAAAAG
GGTCCATCCTAGAATACCTTGCCCTATCTATGATGTACAAACAAATCAAATTGAACCTCTAGCAGAATATCAACAACACA
TTATATTGATCATTGATCAACACAATCTTGCAGAGTGCCTGGACTATGCAAATATGCAGGTTGCAGGGACATGTAGCTGC
AGCTGGAAGCATAGACAGATTTGTGCATTGTGCCGGAAGGATGCCAGTGTTGTTGGTGCATGCCTGCATGGAGAAGCAGT
GCCGATGGCCACCCATGGCCGCAATGAGCGCGTTGTCCTCGAGACAGACTTCTACACCGCCAGGTTGACCTTGTCGCTGG
CCACTGTCACCTCTAACATAATTTCCGGCACCACACCTCTAGATCGGCTAGTTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis