Browse Element(s) Details


Os.17740.1.S1_x_at

Description gb:BI813497
DB_XREF= gi:16579402
DB_XREF=K011B07
CLONE=K011B07
TID=Os.17740.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17740 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g380601/11nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os05g195901/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004514molecular_functionnicotinate-nucleotide diphosphorylase (carboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17740.1.S1_x_at--526--10311NONE
TTTCTGTGGCAGTGGCATTGCCAAG
NONE
Os.17740.1.S1_x_at--74--10611Chr05:11396177..11396327 (25 bp)
TTCTGTGGCAGTGGCATTGCCAAGT
LOC_Os05g19590
Os.17740.1.S1_x_at--339--10691NONE
TTGCCAAGTCATATCAATCCATCCC
NONE
Os.17740.1.S1_x_at--695--9191NONE
TGCCAAGTCATATCAATCCATCCCT
NONE
Os.17740.1.S1_x_at--671--4391NONE
GCCAAGTCATATCAATCCATCCCTT
NONE
Os.17740.1.S1_x_at--146--4391NONE
CCAAGTCATATCAATCCATCCCTTT
NONE
Os.17740.1.S1_x_at--1103--3211NONE
CAAGTCATATCAATCCATCCCTTTC
NONE
Os.17740.1.S1_x_at--362--2851NONE
AAGTCATATCAATCCATCCCTTTCA
NONE
Os.17740.1.S1_x_at--37--1171NONE
AGTCATATCAATCCATCCCTTTCAT
NONE
Os.17740.1.S1_x_at--643--9231Chr09:21934049..21934075 (25 bp)
TCCATCCCTTTCATCAACTTGTAAG
LOC_Os09g38060
Os.17740.1.S1_x_at--1066--3271NONE
CAAACAAAGAATGTTTTTCCCATAT
NONE
Target Sequence 
TTTCTGTGGCAGTGGCATTGCCAAGTCATATCAATCCATCCCTTTCATCAACTTGTAAGCTTGAGTGTACAAACAAAGAA
TGTTTTTCCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17740.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis