Browse Element(s) Details


Os.10118.1.S1_at

Description gb:AB062606.1
DB_XREF= gi:15823774
GEN=UGP
TID=Os.10118.1
CNT=84
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10118 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) UGP mRNA for UDP-glucose pyrophosphorylase, complete cds.
PROD=UDP-glucose pyrophosphorylase
FL= gb:AB062606.1 gb:AK119197.1 gb:AK103930.1 gb:AK119232.1 gb:AK104344.1 gb:AK065780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3803011/11UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005985biological_processsucrose metabolism
GO:0008152biological_processmetabolism
GO:0016036biological_processcellular response to phosphate starvation
GO:0003983molecular_functionUTP:glucose-1-phosphate uridylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10118.1.S1_at--382--10871Chr09:21920802..21920826 (25 bp)
TTGGCATTAATGTTCCCCGCTCGAG
LOC_Os09g38030
Os.10118.1.S1_at--881--9191Chr09:21920832..21920856 (25 bp)
TGCCAGTCAAGGCTACATCTGATTT
LOC_Os09g38030
Os.10118.1.S1_at--1010--8591Chr09:21920965..21920989 (25 bp)
TGGTCGATGGCTTTGTCATCCGCAA
LOC_Os09g38030
Os.10118.1.S1_at--790--2371Chr09:21921011..21921035 (25 bp)
AAACCCTTCGATTGAGCTTGGACCT
LOC_Os09g38030
Os.10118.1.S1_at--206--1471Chr09:21921170..21921191 (22 bp)
AGAAGGTTGCCAATTTCCTGGCCCG
LOC_Os09g38030
Os.10118.1.S1_at--103--9011Chr09:21921230..21921254 (25 bp)
TGAAGGTCTCTGGTGATGTCTGGTT
LOC_Os09g38030
Os.10118.1.S1_at--169--7971Chr09:21921680..21921704 (25 bp)
GGATCTTTGAGGCTGCTCACGGAAA
LOC_Os09g38030
Os.10118.1.S1_at--488--3171Chr09:21921736..21921760 (25 bp)
AATTGTCGTGTGCATTCGGCAGCCA
LOC_Os09g38030
Os.10118.1.S1_at--672--7571Chr09:21921761..21921785 (25 bp)
GGGCTCGATGATCCCATTACAGAAT
LOC_Os09g38030
Os.10118.1.S1_at--294--8731Chr09:21921789..21921813 (25 bp)
TGTAATCATCTTGGCACATCCGTAC
LOC_Os09g38030
Os.10118.1.S1_at--1126--10711Chr09:21921881..21921905 (25 bp)
TTGCATGCACTGTAGCTGGGAGCTC
LOC_Os09g38030
Target Sequence 
TTGGCATTAATGTTCCCCGCTCGAGATTTCTGCCAGTCAAGGCTACATCTGATTTGTTGCTTGTACAGTCTGATTTGTAC
ACCTTGGTCGATGGCTTTGTCATCCGCAACCCAGCCAGAACAAACCCATCAAACCCTTCGATTGAGCTTGGACCTGAGTT
CAAGAAGGTTGCCAATTTCCTGGCCCGGTTTAAGTCAATCCCCAGCATTGTCGAGCTTGACACCTTGAAGGTCTCTGGTG
ATGTCTGGTTCGGCNTCTGGAGTTACACTCAAGGGTAAGGTGACCATCACCGCCAAGTCAGGGAAGTTGGAGATCCCAGA
TGGAGCCGTGCTTGAGAACAAGGACATCAACGGTCCGGAGGATCTTTGAGGCTGCTCACGGAAACCTTCCAGATATATTT
AGCTGAGCGTTTTGTAATTGTCGTGTGCATTCGGCAGCCAGGGCTCGATGATCCCATTACAGAATAATTGTAATCATCTT
GGCACATCCGTACTTCTGTTTTTTGGTGTGCCAAGGGCGTTGTATTTCATTTACTTAAATGATCTCGTAATACCATAGTT
TTGCATGCACTGTAGCTGGGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis