Browse Element(s) Details


Os.19310.1.S1_at

Description gb:AK070189.1
DB_XREF= gi:32980213
TID=Os.19310.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047H08, full insert sequence.
FL= gb:AK070189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3807011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19310.1.S1_at--1073--4671Chr09:21936945..21936969 (25 bp)
GCGGACGCCATGAAAGCGTGAAGCA
LOC_Os09g38070
Os.19310.1.S1_at--321--5611Chr09:21936920..21936944 (25 bp)
GACAAGGGCTTGTACTACTCAACTG
LOC_Os09g38070
Os.19310.1.S1_at--571--9051Chr09:21936808..21936832 (25 bp)
TGCATCCTTCCTGTGGTTTAATCTT
LOC_Os09g38070
Os.19310.1.S1_at--526--3411Chr09:21936760..21936784 (25 bp)
CAGCAGCTTGATCATCTCTTTGTAG
LOC_Os09g38070
Os.19310.1.S1_at--302--4931Chr09:21936755..21936779 (25 bp)
GCTTGATCATCTCTTTGTAGTACTA
LOC_Os09g38070
Os.19310.1.S1_at--995--8751Chr09:21936740..21936764 (25 bp)
TGTAGTACTAGTTCGGTTCCATTTC
LOC_Os09g38070
Os.19310.1.S1_at--782--6711Chr09:21936730..21936754 (25 bp)
GTTCGGTTCCATTTCTTCTTGTAGA
LOC_Os09g38070
Os.19310.1.S1_at--954--3151Chr09:21936672..21936696 (25 bp)
AATTGGGTAGGCAGGCAAGAACACA
LOC_Os09g38070
Os.19310.1.S1_at--739--3871Chr09:21936622..21936646 (25 bp)
CTGTAGATCCCTCATCAACTACTCT
LOC_Os09g38070
Os.19310.1.S1_at--329--1271Chr09:21936543..21936567 (25 bp)
AGATATTCAGTAACCTGCTCGGTGT
LOC_Os09g38070
Os.19310.1.S1_at--468--2631Chr09:21936532..21936556 (25 bp)
AACCTGCTCGGTGTATGCTATGAAT
LOC_Os09g38070
Target Sequence 
GCGGACGCCATGAAAGCGTGAAGCAGACAAGGGCTTGTACTACTCAACTGTACATAGGTTTCCGGGTTTCCCCTGTGCAG
ATGTTGATGTGAAGAGTAGGCAGAAGCAGCTTTAGCTTAGAAATTACTCTTCTTCTTTGCATCCTTCCTGTGGTTTAATC
TTGATTTTTGTTATTACTTGTTTAGCAGCAGCTTGATCATCTCTTTGTAGTACTAGTTCGGTTCCATTTCTTCTTGTAGA
ATCAAATCAGCCAATGGATGATGATGATGATGANNNAATTGGGTAGGCAGGCAAGAACACAAGATGTGGGTGTTCTTCTN
NNGCTCCTGTAGATCCCTCATCAACTACTCTNCTAGTCTCCTAGATAGATAGACTATTATCTTAGAGTATGATGTTAGTA
CCAAAAGATATTCAGTAACCTGCTCGGTGTATGCTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis