Browse Element(s) Details


OsAffx.18043.1.S1_at

Description tigr:9637.m03247
TID=OsAffx.18043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3812011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18043.1.S1_at--744--1411Chr09:21960572..21960596 (25 bp)
AGAAAACGTGACACGAATGGGAGTG
LOC_Os09g38120
OsAffx.18043.1.S1_at--930--6091Chr09:21960611..21960635 (25 bp)
GGGAAGGGTGGACAGCATGGACGAC
LOC_Os09g38120
OsAffx.18043.1.S1_at--453--2151Chr09:21960622..21960646 (25 bp)
ACAGCATGGACGACGCGAAGGTGGC
LOC_Os09g38120
OsAffx.18043.1.S1_at--1137--7171Chr09:21960811..21960835 (25 bp)
GTCGGCACCGGCTGGCATGTTGCAA
LOC_Os09g38120
OsAffx.18043.1.S1_at--444--5091Chr09:21960815..21960839 (25 bp)
GCACCGGCTGGCATGTTGCAAGCCT
LOC_Os09g38120
OsAffx.18043.1.S1_at--888--4711Chr09:21960821..21960845 (25 bp)
GCTGGCATGTTGCAAGCCTGCTTGA
LOC_Os09g38120
OsAffx.18043.1.S1_at--814--8271Chr09:21960824..21960848 (25 bp)
GGCATGTTGCAAGCCTGCTTGACAG
LOC_Os09g38120
OsAffx.18043.1.S1_at--1145--6651Chr09:21960829..21960853 (25 bp)
GTTGCAAGCCTGCTTGACAGTCGAC
LOC_Os09g38120
OsAffx.18043.1.S1_at--238--5171Chr09:21960832..21960856 (25 bp)
GCAAGCCTGCTTGACAGTCGACGCT
LOC_Os09g38120
OsAffx.18043.1.S1_at--116--2671Chr09:21960834..21960858 (25 bp)
AAGCCTGCTTGACAGTCGACGCTGC
LOC_Os09g38120
OsAffx.18043.1.S1_at--1024--1671Chr09:21960835..21960859 (25 bp)
AGCCTGCTTGACAGTCGACGCTGCC
LOC_Os09g38120
Target Sequence 
AGAAAACGTGACACGAATGGGAGTGGGAAGGACAACGAGGGGAAGGGTGGACAGCATGGACGACGCGAAGGTGGCGTTGA
TGTCGGCACCGGCTGGCATGTTGCAAGCCTGCTTGACAGTCGACGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis