Browse Element(s) Details


OsAffx.6515.1.S1_at

Description tigr:9637.m03252
TID=OsAffx.6515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38200NANA9+22000708..22005426retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6515.1.S1_at--1046--3631Chr09:21981465..21981489 (25 bp)
CTTCCTCGCGTGGTAACAGTGATGT
LOC_Os09g38160
OsAffx.6515.1.S1_at--363--7051Chr09:21981453..21981477 (25 bp)
GTAACAGTGATGTCACCTGTGGTGT
LOC_Os09g38160
OsAffx.6515.1.S1_at--1050--9671Chr09:21981441..21981465 (25 bp)
TCACCTGTGGTGTGCTCGGCTCAGA
LOC_Os09g38160
OsAffx.6515.1.S1_at--715--8691Chr09:21981431..21981455 (25 bp)
TGTGCTCGGCTCAGAGTGATCGTTC
LOC_Os09g38160
OsAffx.6515.1.S1_at--635--8311Chr09:21981424..21981448 (25 bp)
GGCTCAGAGTGATCGTTCGGTGTAC
LOC_Os09g38160
OsAffx.6515.1.S1_at--614--7691Chr09:21981396..21981420 (25 bp)
GGGTACTTCCAGTTGGCCCTGCCAC
LOC_Os09g38160
OsAffx.6515.1.S1_at--136--9231Chr09:21981371..21981395 (25 bp)
TCCTCCTTGGTCTCGTTGACGGGAT
LOC_Os09g38160
OsAffx.6515.1.S1_at--982--10851Chr09:21981365..21981389 (25 bp)
TTGGTCTCGTTGACGGGATCTTCAA
LOC_Os09g38160
OsAffx.6515.1.S1_at--780--5751Chr09:21981354..21981378 (25 bp)
GACGGGATCTTCAAAGCTGGAAAAT
LOC_Os09g38160
OsAffx.6515.1.S1_at--205--3891Chr09:21981338..21981362 (25 bp)
CTGGAAAATATAGCCACAACTGGAT
LOC_Os09g38160
OsAffx.6515.1.S1_at--129--4411Chr09:21981326..21981350 (25 bp)
GCCACAACTGGATCATTTCAGTCAA
LOC_Os09g38160
Target Sequence 
CTTCCTCGCGTGGTAACAGTGATGTCACCTGTGGTGTGCTCGGCTCAGAGTGATCGTTCGGTGTACGAGGGGTACTTCCA
GTTGGCCCTGCCACTCCTCCTTGGTCTCGTTGACGGGATCTTCAAAGCTGGAAAATATAGCCACAACTGGATCATTTCAG
TCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis