Browse Element(s) Details


Os.19608.1.S1_at

Description gb:AK070682.1
DB_XREF= gi:32980706
TID=Os.19608.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062B02, full insert sequence.
FL= gb:AK070682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3813011/11Auxin Efflux Carrier family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19608.1.S1_at--741--9191Chr09:21967142..21967166 (25 bp)
TGCCATTGCACTCACGACGTGGTCG
LOC_Os09g38130
Os.19608.1.S1_at--1136--5752Chr09:21974642..21974666 (25 bp)
GACGTGGTCGACGATATTCATGTCC
NONE
Os.19608.1.S1_at--893--773Chr09:21974661..21974685 (25 bp)
ATGTCCATCCTGTCTTGAGGTTGAG
NONE
Os.19608.1.S1_at--376--5371Chr09:21967209..21967233 (25 bp)
GAAGAACCAACTTTGTGGCAATATT
LOC_Os09g38130
Os.19608.1.S1_at--399--7511Chr09:21967223..21967247 (25 bp)
GTGGCAATATTGGTTTAGCTGGAAT
LOC_Os09g38130
Os.19608.1.S1_at--646--3911Chr09:21967241..21967265 (25 bp)
CTGGAATGATTCAGCTCACGGATAA
LOC_Os09g38130
Os.19608.1.S1_at--487--691Chr09:21967287..21967311 (25 bp)
ATGAGCCTCTCCGAAAGAGCCGAAA
LOC_Os09g38130
Os.19608.1.S1_at--1023--2331Chr09:21967300..21967324 (25 bp)
AAAGAGCCGAAACTGAGGCTTGCCC
LOC_Os09g38130
Os.19608.1.S1_at--1105--1811Chr09:21967336..21967360 (25 bp)
ACGTCCACACGTGTATAGAAATTGA
LOC_Os09g38130
Os.19608.1.S1_at--1097--9891Chr09:21967496..21967520 (25 bp)
TACTCCCAATCATCCTCACTTTATT
LOC_Os09g38130
Os.19608.1.S1_at--140--291Chr09:21967586..21967610 (25 bp)
ATAGTCTATCGTCTTCTCTAAATAT
LOC_Os09g38130
Target Sequence 
TGCCATTGCACTCACGACGTGGTCGACGATATTCATGTCCATCCTGTCTTGAGGTTGAGGGTGACAAGAAGAACCAACTT
TGTGGCAATATTGGTTTAGCTGGAATGATTCAGCTCACGGATAAAATGTAAAGAAGCCGGAGACAATGAGCCTCTCCGAA
AGAGCCGAAACTGAGGCTTGCCCATGAGCACCACACGTCCACACGTGTATAGAAATTGAAGCAGTATTTTTTTAGATAAN
NAAAAATAGCATGGTGGCCCGCGTAGATAACNTATAATTTTTTTAACANANNAAAAAATATTTTTATTTTTTTCAGTTAT
TTCAAAATTGTATTTTTTATATGGACTCTATACTCTACTCCCAATCATCCTCACTTTATTAAATTTCTAATTTTGTAGTT
CGAAATTTTGTTATTTCTAAATTATACTCTTCTTATATGGACTTAATAGTCTATCGTCTTCTCTAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis