Browse Element(s) Details


OsAffx.6516.1.S1_at

Description tigr:9637.m03253
TID=OsAffx.6516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3817011/11hypothetical protein
LOC_Os09g335905/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38200NANA9+22000708..22005426retrotransposon protein, putative, unclassified
LOC_Os09g38210Os.13580.1.A1_at4/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38210Os.49579.1.S1_at1/119+22007030..22009086Auxin Efflux Carrier family protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6516.1.S1_at--384--10131Chr09:21985965..21985989 (25 bp)
TATCCGCAAGCAAACGTCGTTACAG
LOC_Os09g38170
OsAffx.6516.1.S1_at--341--412Chr09:19820621..19820645 (25 bp)
ATCAGGATTGTTCAGAGGCTCTACC
LOC_Os09g33590
OsAffx.6516.1.S1_at--744--6651Chr09:21985830..21985854 (25 bp)
GTTGATGGTTCCTTTGACTCTGTAA
LOC_Os09g38170
OsAffx.6516.1.S1_at--520--3072Chr09:19820743..19820767 (25 bp)
AATACCAGCGGCCAGGTTATTTTCT
LOC_Os09g33590
OsAffx.6516.1.S1_at--452--9492Chr09:19820772..19820791 (20 bp)
TCTGCCTGTGGTTTTATTGAGCGTT
LOC_Os09g33590
OsAffx.6516.1.S1_at--511--811Chr09:21985674..21985698 (25 bp)
ATGGCGCTTCAATGGACCTTACTGT
LOC_Os09g38170
OsAffx.6516.1.S1_at--598--8751Chr09:21985642..21985666 (25 bp)
TGTAGAGACTGATTGCCTGACGGCT
LOC_Os09g38170
OsAffx.6516.1.S1_at--394--3371Chr09:21985583..21985607 (25 bp)
CAGCGCTTGCTCACGTTGTTAAAGA
LOC_Os09g38170
OsAffx.6516.1.S1_at--1150--492Chr09:19820959..19820983 (25 bp)
ATCGGGATTCTGATGTCTGGAGACC
LOC_Os09g33590
OsAffx.6516.1.S1_at--856--5992Chr09:19820978..19821002 (25 bp)
GAGACCGGGAGATTGTCCTCAAGAA
LOC_Os09g33590
OsAffx.6516.1.S1_at--312--352Chr09:19821044..19821068 (25 bp)
ATAAGGCCCGTGCTGAAACTTTGTC
NONE
Target Sequence 
TATCCGCAAGCAAACGTCGTTACAGGGAAACATGTGGTTCAATGCAGACCAAGACAGGGCCTGAAAATTCATCAGGATTG
TTCAGAGGCTCTACCCAGGTGGGAGAAACCGCAGGAGCGATGGATGAAGCTAAATGTTGATGGTTCCTTTGACTCTGTAA
CAAGCACAGGAAGTGTGGGTGTGGTGCTCAGGAATACCAGCGGCCAGGTTATTTTCTCTGCCTGTGGTTTTATTGAGCGT
TGTACTAGCCCCCTGGAGTCTGAACTTCTGGCCTGCAAAGAGGGGCTCAATATGGCGCTTCAATGGACCTTACTGTCGAT
AATTGTAGAGACTGATTGCCTGACGGCTGTTAATATGATTCAAGATGCGCGGAAGGAAATGTCAGCGCTTGCTCACGTTG
TTAAAGACATCGGGATTCTGATGTCTGGAGACCGGGAGATTGTCCTCAAGAAAATTCAGCGTTCTCAGAATTCCATTAGT
TATTTTCTAGCTAATAAGGCCCGTGCTGAAACTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis