Browse Element(s) Details


OsAffx.18044.1.S1_at

Description tigr:9637.m03251
TID=OsAffx.18044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18044.1.S1_at--755--5371Chr09:21972690..21972714 (25 bp)
GAAGAAGACACAAGCCCTACAAGAT
LOC_Os09g38150
OsAffx.18044.1.S1_at--253--3131Chr09:21972643..21972667 (25 bp)
AATTTATCAAGCTTGGTTATGCCAG
LOC_Os09g38150
OsAffx.18044.1.S1_at--530--971Chr09:21972595..21972619 (25 bp)
AGGAGTACTACCTCACGGATTGTAA
LOC_Os09g38150
OsAffx.18044.1.S1_at--516--5351Chr09:21972563..21972587 (25 bp)
GAAGATACCCTACTTAAGTTCAGGA
LOC_Os09g38150
OsAffx.18044.1.S1_at--203--4091Chr09:21972504..21972528 (25 bp)
CGAAATGCAACTCAAGATCCGGGCT
LOC_Os09g38150
OsAffx.18044.1.S1_at--525--1311Chr09:21972354..21972378 (25 bp)
AGATGTACCTGAGTACTTCCAGCAG
LOC_Os09g38150
OsAffx.18044.1.S1_at--666--3391Chr09:21972335..21972359 (25 bp)
CAGCAGGCCTACTTCCAGAAATTTA
LOC_Os09g38150
OsAffx.18044.1.S1_at--571--10311Chr09:21972314..21972338 (25 bp)
TTTAAGGTACCTGACGACATCCGAC
LOC_Os09g38150
OsAffx.18044.1.S1_at--859--4091Chr09:21972300..21972324 (25 bp)
CGACATCCGACTGCGTTACATAAAT
LOC_Os09g38150
OsAffx.18044.1.S1_at--340--1451Chr09:21972205..21972229 (25 bp)
AGAAGTTGAAGTCCCTCATCACCTG
LOC_Os09g38150
OsAffx.18044.1.S1_at--328--9611Chr09:21972190..21972214 (25 bp)
TCATCACCTGTCATCTCTTGTGCGG
LOC_Os09g38150
Target Sequence 
GAAGAAGACACAAGCCCTACAAGATATGGAAGAGAGGTTCAAGCAACAATTTATCAAGCTTGGTTATGCCAGGAAAGGCA
TACCTGAGCATATCCAGGAGTACTACCTCACGGATTGTAAGTTACATGAAGATACCCTACTTAAGTTCAGGAATGATGTC
GAGGAGAAATTCGAGATGCGTAACCACGAAATGCAACTCAAGATCCGGGCTTGGGAGAAAACACAGCAGTTTCGGATTGA
GATGATGGCTGATAAACGGGCAGCGAAGAAGACAAAGGCACTGCAAGATATGGAGGAGAGATATATTCAGGATTTTATGA
ACATAGTTGACAAATTAGATGTACCTGAGTACTTCCAGCAGGCCTACTTCCAGAAATTTAAGGTACCTGACGACATCCGA
CTGCGTTACATAAATGATATCGAGGAGGAATTCAGGATGCTTGGTGACAAAGAGGGATATAAGGTTCACATTTGGGACAG
TTTCAAGAAGTTGAAGTCCCTCATCACCTGTCATCTCTTGTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis