Browse Element(s) Details


Os.47814.1.A1_s_at

Description gb:BX928214
DB_XREF= gi:41883026
DB_XREF=BX928214
CLONE=y617d08p3
TID=Os.47814.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47814 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3813011/11Auxin Efflux Carrier family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein
LOC_Os09g38170OsAffx.6516.1.S1_at11/119+21985402..21986679hypothetical protein
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47814.1.A1_s_at--324--2051Chr09:21967632..21967656 (25 bp)
ACTTATTTCTAAACTGTACTCCTAT
LOC_Os09g38130
Os.47814.1.A1_s_at--489--191Chr09:21967636..21967660 (25 bp)
ATTTCTAAACTGTACTCCTATATGG
LOC_Os09g38130
Os.47814.1.A1_s_at--797--10572Chr09:21967638..21967662 (25 bp)
TTCTAAACTGTACTCCTATATGGAC
LOC_Os09g38130
Os.47814.1.A1_s_at--540--2371Chr09:21967642..21967666 (25 bp)
AAACTGTACTCCTATATGGACTTAG
LOC_Os09g38130
Os.47814.1.A1_s_at--506--1951Chr09:21967644..21967668 (25 bp)
ACTGTACTCCTATATGGACTTAGAC
LOC_Os09g38130
Os.47814.1.A1_s_at--334--7012Chr09:21967647..21967671 (25 bp)
GTACTCCTATATGGACTTAGACTGG
LOC_Os09g38130
Os.47814.1.A1_s_at--16--3791Chr09:21967650..21967674 (25 bp)
CTCCTATATGGACTTAGACTGGTGT
LOC_Os09g38130
Os.47814.1.A1_s_at--93--1851Chr09:21967676..21967700 (25 bp)
ACGCACATCAGTCGTGGCGTTGGTA
LOC_Os09g38130
Os.47814.1.A1_s_at--779--3311Chr09:21967679..21967703 (25 bp)
CACATCAGTCGTGGCGTTGGTAGGA
LOC_Os09g38130
Os.47814.1.A1_s_at--29--211Chr09:21967682..21967706 (25 bp)
ATCAGTCGTGGCGTTGGTAGGAAAT
LOC_Os09g38130
Os.47814.1.A1_s_at--1059--9631Chr09:21967683..21967707 (25 bp)
TCAGTCGTGGCGTTGGTAGGAAATA
LOC_Os09g38130
Target Sequence 
ACTTATTTCTAAACTGTACTCCTATATGGACTTAGACTGGTGTAACGCACATCAGTCGTGGCGTTGGTAGGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47814.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis