Browse Element(s) Details


OsAffx.18042.1.S1_at

Description tigr:9637.m03244
TID=OsAffx.18042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial carrier protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3810011/11Mitochondrial carrier protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18042.1.S1_at--287--3751Chr09:21950937..21950961 (25 bp)
CTCTGCCCCTTTGAATCGGTGAAAG
LOC_Os09g38100
OsAffx.18042.1.S1_at--8--2311Chr09:21950883..21950907 (25 bp)
AAAGGCTTGATTGATGGCTTCCCAA
LOC_Os09g38100
OsAffx.18042.1.S1_at--826--4891Chr09:21950867..21950891 (25 bp)
GCTTCCCAAGGGTGTATGCCACTGA
LOC_Os09g38100
OsAffx.18042.1.S1_at--968--4391Chr09:21950852..21950874 (23 bp)
GCCACTGAAGGCTTGTCCGGGTACA
LOC_Os09g38100
OsAffx.18042.1.S1_at--661--7031Chr09:21950498..21950522 (25 bp)
GTACAACTGCACAAGTCACATCGCT
LOC_Os09g38100
OsAffx.18042.1.S1_at--94--10271Chr09:21950162..21950186 (25 bp)
TTTGTTCTATTCGTGCAGTTTCTAT
LOC_Os09g38100
OsAffx.18042.1.S1_at--1134--3571Chr09:21950123..21950147 (25 bp)
CATTTGAGCATACTGTGGACATCCT
LOC_Os09g38100
OsAffx.18042.1.S1_at--727--8571Chr09:21950005..21950029 (25 bp)
TGGTACTGTTGTTTCCAATCCTGCA
LOC_Os09g38100
OsAffx.18042.1.S1_at--645--2731Chr09:21949804..21949828 (25 bp)
AAGAAGCCTACCTGTTCGAATCACT
LOC_Os09g38100
OsAffx.18042.1.S1_at--558--10631Chr09:21949790..21949814 (25 bp)
TTCGAATCACTCTTGTTGGGCCTGT
LOC_Os09g38100
OsAffx.18042.1.S1_at--456--6631Chr09:21949776..21949800 (25 bp)
GTTGGGCCTGTCATAACCATGCAAT
LOC_Os09g38100
Target Sequence 
CTCTGCCCCTTTGAATCGGTGAAAGTCCGTGTGCAGACACAACCTATGTTTGCAAAAGGCTTGATTGATGGCTTCCCAAG
GGTGTATGCCACTGAAGGCTTGTCCGGGTACAACTGCACAAGTCACATCGCTGACAACAAAACTCTAGGTGTGAAGTACT
TAATTGTATATCTTATCACCATTTGTTCTATTCGTGCAGTTTCTATGCTAATGTTTTCAACATTTGAGCATACTGTGGAC
ATCCTATATCGGAATGTCATTCAGAAGAAAAAGGAGGATTGTTCAACAATGCAGCAGCTTGGGGCTACTTGTCTGGCTGG
CTACATATCTGGTGCAGTTGGTACTGTTGTTTCCAATCCTGCAGATAACATTGTCTCATCTCTATACAACAAAAAGGCTA
AAAATATCATAGATGCTGTGAAAAGTATTGGGTTTCGTGGTTTGTTCACAAGAAGCCTACCTGTTCGAATCACTCTTGTT
GGGCCTGTCATAACCATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis