Browse Element(s) Details


Os.55583.1.S1_at

Description gb:AK108361.1
DB_XREF= gi:32993570
TID=Os.55583.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C10, full insert sequence.
FL= gb:AK108361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3811011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein
LOC_Os09g38160OsAffx.6515.1.S1_at11/119+21980835..21981519hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55583.1.S1_at--392--4471Chr09:21956336..21956360 (25 bp)
GCCTGCGTCGACGTCTGGCTCGTGT
LOC_Os09g38110
Os.55583.1.S1_at--920--9131Chr09:21956333..21956357 (25 bp)
TGCGTCGACGTCTGGCTCGTGTCCA
LOC_Os09g38110
Os.55583.1.S1_at--344--3491Chr09:21956195..21956219 (25 bp)
CAGGCGTCGTCACAGCCACCGCAAC
LOC_Os09g38110
Os.55583.1.S1_at--691--9171Chr09:21956144..21956168 (25 bp)
TGCCGGACATCGGTGCCGTAGAGCT
LOC_Os09g38110
Os.55583.1.S1_at--205--4491Chr09:21956143..21956167 (25 bp)
GCCGGACATCGGTGCCGTAGAGCTC
LOC_Os09g38110
Os.55583.1.S1_at--256--5671Chr09:21956139..21956163 (25 bp)
GACATCGGTGCCGTAGAGCTCCAGC
LOC_Os09g38110
Os.55583.1.S1_at--742--2091Chr09:21956138..21956162 (25 bp)
ACATCGGTGCCGTAGAGCTCCAGCT
LOC_Os09g38110
Os.55583.1.S1_at--697--7771Chr09:21956133..21956157 (25 bp)
GGTGCCGTAGAGCTCCAGCTCTCTC
LOC_Os09g38110
Os.55583.1.S1_at--951--4131Chr09:21956107..21956131 (25 bp)
CGCTCGCGTACGTGCATCATTCGAT
LOC_Os09g38110
Os.55583.1.S1_at--846--4791Chr09:21956106..21956130 (25 bp)
GCTCGCGTACGTGCATCATTCGATT
LOC_Os09g38110
Os.55583.1.S1_at--956--3791Chr09:21956105..21956129 (25 bp)
CTCGCGTACGTGCATCATTCGATTG
LOC_Os09g38110
Target Sequence 
GCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTC
GCCTGCAGTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCAC
CGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTCTCTCTCGCTCGCGTAC
GTGCATCATTCGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis