Browse Element(s) Details


Os.12226.1.S1_at

Description gb:AK068240.1
DB_XREF= gi:32978258
TID=Os.12226.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149L15, full insert sequence.
FL= gb:AK068240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3806011/11nicotinate-nucleotide pyrophosphorylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004514molecular_functionnicotinate-nucleotide diphosphorylase (carboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12226.1.S1_at--494--2811Chr09:21933930..21934028 (25 bp)
AAGATCTGCAGGGTGTTTCTGTGGC
LOC_Os09g38060
Os.12226.1.S1_at--760--7531Chr09:21934029..21934053 (25 bp)
GTGGCTTGCCAGTCTATCAATCCAT
LOC_Os09g38060
Os.12226.1.S1_at--567--2511Chr09:21934154..21934178 (25 bp)
AACATTACCTTGTAGGCTTGCCTAC
LOC_Os09g38060
Os.12226.1.S1_at--1116--10691Chr09:21934171..21934195 (25 bp)
TTGCCTACCGTCCTAGCATTTGTAT
LOC_Os09g38060
Os.12226.1.S1_at--309--6591Chr09:21934216..21934240 (25 bp)
GATTGCGGCAAGTTATCGAATTTTA
LOC_Os09g38060
Os.12226.1.S1_at--863--10491Chr09:21934249..21934273 (25 bp)
TTAATAAGACTTTTTGCACCATGAA
LOC_Os09g38060
Os.12226.1.S1_at--1129--3091Chr09:21934275..21934299 (25 bp)
AATTAGCAAGCTGGACACTGTAAAT
LOC_Os09g38060
Os.12226.1.S1_at--319--1971Chr09:21934291..21934315 (25 bp)
ACTGTAAATGGGATGTGCGCGGCAT
LOC_Os09g38060
Os.12226.1.S1_at--228--7291Chr09:21934305..21934329 (25 bp)
GTGCGCGGCATTGAACTTGCAGTTC
LOC_Os09g38060
Os.12226.1.S1_at--661--5031Chr09:21934323..21934347 (25 bp)
GCAGTTCTGCACTTGTGTTTGACCA
LOC_Os09g38060
Os.12226.1.S1_at--931--2291Chr09:21934390..21934414 (25 bp)
AAAGGAAGTCTAACACAGCAGTGCA
LOC_Os09g38060
Target Sequence 
AAGATCTGCAGGGTGTTTCTGTGGCGTGGCTTGCCAGTCTATCAATCCATGCCCTTCTCATCAACTTGTAAGCGTTGAGT
GTACAACAAAGAATGTGTTTTCCCATATTTATGGGATATAAACCAACACCACATAATACAGCAAAATAATAACATTACCT
TGTAGGCTTGCCTACCGTCCTAGCATTTGTATTTGGTAGAAAAAAAACTGCAGATTGCGGCAAGTTATCGAATTTTACTC
AGGTATTAATAAGACTTTTTGCACCATGAAAAATTAGCAAGCTGGACACTGTAAATGGGATGTGCGCGGCATTGAACTTG
CAGTTCTGCACTTGTGTTTGACCAAACAAACACTATAAAATGGTGATGTTTGTGATCTACAAAAGAAAAGGAAGTCTAAC
ACAGCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis