Browse Element(s) Details


OsAffx.30185.1.S1_at

Description tigr:9637.m03239
TID=OsAffx.30185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3801011/11NAC-domain containing protein 78, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30185.1.S1_at--11--5391Chr09:21907580..21907604 (25 bp)
GAAGAAGACACTAGTCTACTACAAA
LOC_Os09g38010
OsAffx.30185.1.S1_at--274--5351Chr09:21907583..21907607 (25 bp)
GAAGACACTAGTCTACTACAAAGGT
LOC_Os09g38010
OsAffx.30185.1.S1_at--331--5631Chr09:21907586..21907610 (25 bp)
GACACTAGTCTACTACAAAGGTCGA
LOC_Os09g38010
OsAffx.30185.1.S1_at--257--1131Chr09:21907589..21907613 (25 bp)
ACTAGTCTACTACAAAGGTCGAGCT
LOC_Os09g38010
OsAffx.30185.1.S1_at--17--10071Chr09:21907591..21907615 (25 bp)
TAGTCTACTACAAAGGTCGAGCTCC
LOC_Os09g38010
OsAffx.30185.1.S1_at--724--1151Chr09:21907592..21907616 (25 bp)
AGTCTACTACAAAGGTCGAGCTCCT
LOC_Os09g38010
OsAffx.30185.1.S1_at--142--6511Chr09:21907622..21907646 (25 bp)
GATTAGAACCAGTTGGGTGATGCAT
LOC_Os09g38010
OsAffx.30185.1.S1_at--208--151Chr09:21907623..21907647 (25 bp)
ATTAGAACCAGTTGGGTGATGCATG
LOC_Os09g38010
OsAffx.30185.1.S1_at--202--3911Chr09:21909369..21909393 (25 bp)
CTGGACAATCCTCGGGAGCAAATGA
LOC_Os09g38010
OsAffx.30185.1.S1_at--824--811Chr09:21909439..21909463 (25 bp)
ATGGTGCACCAACAAACTAAAGTGA
LOC_Os09g38010
OsAffx.30185.1.S1_at--252--9031Chr09:21909443..21909467 (25 bp)
TGCACCAACAAACTAAAGTGAACTA
LOC_Os09g38010
Target Sequence 
GAAGAAGACACTAGTCTACTACAAAGGTCGAGCTCCTCAGGGGATTAGAACCAGTTGGGTGATGCATGAGTACCGCATCG
AGGAAAGCGAATGCGAGAACGCCATGGGGATTCAGGACTCCTATGCGCTATGTCGGATTTTCAAGAAGAATGTGGTGTTG
GGTGAATTTGACAAGAAAGGGGAGTGCAGTTCATCACAGGCTAAAGGAAATGAAGAAGTTACAGATTTCGGGGATGCTGG
ACAATCCTCGGGAGCAAATGAGAATGATAAAGACAATTCATGGATGCAATTCATAGCAGAGGATCTATGGTGCACCAACA
AACTAAAGTGAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis