Browse Element(s) Details


Os.55779.1.S1_at

Description gb:AK108790.1
DB_XREF= gi:32993999
TID=Os.55779.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B06, full insert sequence.
FL= gb:AK108790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3796711/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55779.1.S1_at--540--891Chr09:21891657..21891681 (25 bp)
AGGCCGGCGATGAAGCAGTTCACCG
LOC_Os09g37967
Os.55779.1.S1_at--619--7991Chr09:21891548..21891572 (25 bp)
GGATGACCAAGTGAGCGAAGCCAAC
LOC_Os09g37967
Os.55779.1.S1_at--262--1651Chr09:21891535..21891559 (25 bp)
AGCGAAGCCAACTCCGGATTTGATC
LOC_Os09g37967
Os.55779.1.S1_at--959--9271Chr09:21891523..21891547 (25 bp)
TCCGGATTTGATCTCTCCGGCGATG
LOC_Os09g37967
Os.55779.1.S1_at--747--591Chr09:21891488..21891512 (25 bp)
ATGCCCACAGTAGAACACTGCGCGT
LOC_Os09g37967
Os.55779.1.S1_at--271--3331Chr09:21891473..21891497 (25 bp)
CACTGCGCGTGTCTTTGTCTTTCAG
LOC_Os09g37967
Os.55779.1.S1_at--404--10791Chr09:21891459..21891483 (25 bp)
TTGTCTTTCAGTCTTCACCTTGCGA
LOC_Os09g37967
Os.55779.1.S1_at--1034--10511Chr09:21891446..21891470 (25 bp)
TTCACCTTGCGAGAAGTCATGGCAG
LOC_Os09g37967
Os.55779.1.S1_at--990--10751Chr09:21891412..21891436 (25 bp)
TTGATCAGTCTCAGCATGCGAATAA
LOC_Os09g37967
Os.55779.1.S1_at--1026--4971Chr09:21891399..21891423 (25 bp)
GCATGCGAATAATGTCACCAAGTAC
LOC_Os09g37967
Os.55779.1.S1_at--984--3071Chr09:21891371..21891395 (25 bp)
AATAATCGGAACTAGCAGTGCAATA
LOC_Os09g37967
Target Sequence 
AGGCCGGCGATGAAGCAGTTCACCGGGAAGGGATCGGTGATCGGCGGCCTGACGCCGGAGATCGTGCAGGCGGCGCTCAA
CGTGTCGCCGGAGTTGGTCGAGCAGCTCAGGATGACCAAGTGAGCGAAGCCAACTCCGGATTTGATCTCTCCGGCGATGG
GGTGTGGTGATGCCCACAGTAGAACACTGCGCGTGTCTTTGTCTTTCAGTCTTCACCTTGCGAGAAGTCATGGCAGGATT
AAGTGTTGATCAGTCTCAGCATGCGAATAATGTCACCAAGTACAATAATAATCGGAACTAGCAGTGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis