Browse Element(s) Details


OsAffx.30187.3.S1_at

Description tigr:9637.m03232
TID=OsAffx.30187.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g379408/11hypothetical protein
LOC_Os03g502403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30187.3.S1_at--947--1911Chr03:28594320..28594344 (25 bp)
ACGGTGATCGCCTACTCGTCCGCGG
LOC_Os03g50240
OsAffx.30187.3.S1_at--80--7411Chr03:28594323..28594347 (25 bp)
GTGATCGCCTACTCGTCCGCGGTGG
LOC_Os03g50240
OsAffx.30187.3.S1_at--1007--6371Chr03:28594325..28594349 (25 bp)
GATCGCCTACTCGTCCGCGGTGGTG
LOC_Os03g50240
OsAffx.30187.3.S1_at--840--10671Chr09:21879030..21879054 (25 bp)
TTCCTTGTTGGGTCTGCCCCGAGCG
LOC_Os09g37940
OsAffx.30187.3.S1_at--370--9211Chr09:21879031..21879055 (25 bp)
TCCTTGTTGGGTCTGCCCCGAGCGC
LOC_Os09g37940
OsAffx.30187.3.S1_at--82--4212Chr09:21879119..21879143 (25 bp)
CCCCTCTCTCCCTGAGAATGGTGAG
LOC_Os09g37940
OsAffx.30187.3.S1_at--489--3772Chr09:21879122..21879146 (25 bp)
CTCTCTCCCTGAGAATGGTGAGCGC
LOC_Os09g37940
OsAffx.30187.3.S1_at--1046--9512Chr09:21879123..21879147 (25 bp)
TCTCTCCCTGAGAATGGTGAGCGCC
LOC_Os09g37940
OsAffx.30187.3.S1_at--813--9491Chr09:21879125..21879149 (25 bp)
TCTCCCTGAGAATGGTGAGCGCCGG
LOC_Os09g37940
OsAffx.30187.3.S1_at--775--3791Chr09:21879126..21879150 (25 bp)
CTCCCTGAGAATGGTGAGCGCCGGC
LOC_Os09g37940
OsAffx.30187.3.S1_at--615--4691Chr09:21879166..21879190 (25 bp)
GCGGCAACGGAGCTGAGACTTGAGA
LOC_Os09g37940
Target Sequence 
ACGGTGATCGCCTACTCGTCCGCGGTGGTGTTCAAGGGCGCCGCCATGGCNGTCGTGCTCCTGCTCATGCTGGTCCAGCT
CCCGGGCTACCTCAGCTGCCTCCTCCTCTGCGCCATCAGAGCAGCCGTCGAGAGGGCCGTGGCGGCCACCTTCGCCGCCG
CCGGGGANGCNGTCTCNGCGGCGGCGGACGCNGCNNTGGGGTNGAGGGACGCCGCGTCGTCGAACAGCACCGCGGCGGTG
GCATTCGTGCAGGCCGCCATGGGNAGGCCCAAGGCGCTGCTCGCCGAGATGCTCGCCATCTTCGGCCTCGTCGCCTCGCT
TTCGTGCAGTCCAGCGACGAGGAGGAGGAGGACTTCCTTGTTGGGTCTGCCCCGAGCGCCGCCGCGGCCCGCCGCCACCT
TCTTCTCCGGCGCAGTGCTCGCTATCCCCTTCTCTCTATCCCCCCCTCTCTCCCTGAGAATGGTGAGCGCCGGCGGAAGG
CGCACAGGGGCGGCAACGGAGCTGAGACTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30187.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis