Browse Element(s) Details


OsAffx.18041.1.S1_at

Description tigr:9637.m03237
TID=OsAffx.18041.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g379908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18041.1.S1_at--315--872Chr09:21898646..21898886 (25 bp)
ATGGCCAGGGTCGTTATGGGCCGGC
LOC_Os09g37990
OsAffx.18041.1.S1_at--1042--3894Chr01:11078350..11078374 (25 bp)
CTGGGACGCCGGCTTGCATGGCGGC
NONE
OsAffx.18041.1.S1_at--103--7815Chr01:11078447..11078471 (25 bp)
GGTCGAGCTCGGATTCAGCCGCACA
NONE
OsAffx.18041.1.S1_at--823--7935Chr03:11896459..11896482 (24 bp)
GGATTCAGCCGCACAGCACTGCCAT
NONE
OsAffx.18041.1.S1_at--197--1494Chr01:11078471..11078495 (25 bp)
AGCACTGCCATCACGACCGGCGATG
NONE
OsAffx.18041.1.S1_at--889--3815Chr01:11078475..11078499 (25 bp)
CTGCCATCACGACCGGCGATGACGA
NONE
OsAffx.18041.1.S1_at--832--7636Chr03:11896507..11896526 (20 bp)
GGGACGCCATGTGGGTGCCTTCTCA
NONE
OsAffx.18041.1.S1_at--116--1835Chr01:11078504..11078528 (25 bp)
ACGCCATGTGGGTGCCTTCTCATCT
NONE
OsAffx.18041.1.S1_at--1107--9291Chr01:11078541..11078565 (25 bp)
TCCCCTTCTTGACCGCTTGGTTGTG
NONE
OsAffx.18041.1.S1_at--1102--7631Chr01:11078566..11078590 (25 bp)
GGGAGCTCCTTTGCGAGACGATGAA
NONE
OsAffx.18041.1.S1_at--307--4791Chr01:11078570..11078594 (25 bp)
GCTCCTTTGCGAGACGATGAAGGCA
NONE
Target Sequence 
ATGGCCAGGGTCGTTATGGGCCGGCGTCCCCGGCGCACGGGAGGACGGCGCGTGCGGAAGGACGGCGCATGTGCGACGGG
AGGACGCCGGCGTCGAGGTCGATGCGTGCGGCGCCGTGCAGCAGGCCGACGCGGCANTGGCTGGCGCCGGNNATGCTTGC
NGCCGNNCCTCGTGGATGACCGCCGGTGGGGGCTGCTGCCAGANGGATGGCTNCGTTGTGGGGGACCCGACTGGGACGCC
GGCTTGCATGGCGGCNGCGGGGTCGTTGCGNGTCGCCNGTGTGGCGNNGCTGCAGGTGTTGGCCGGTGGAGNTGCCGCCG
GATCTGGGGTCGAGCTCGGATTCAGCCGCACAGCACTGCCATCACGACCGGCGATGACGAGGGGACGCCATGTGGGTGCC
TTCTCATCTCCTTGGAGCTCCTCCCCTTCTTGACCGCTTGGTTGTGGGGAGCTCCTTTGCGAGACGATGAAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis