Browse Element(s) Details


Os.55742.1.S1_at

Description gb:AK108700.1
DB_XREF= gi:32993909
TID=Os.55742.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H02, full insert sequence.
FL= gb:AK108700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3797610/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55742.1.S1_at--668--1911Chr09:21895305..21895329 (25 bp)
ACGTGTCGCCGGAATTTGTGGAACA
LOC_Os09g37976
Os.55742.1.S1_at--486--211Chr09:21895292..21895316 (25 bp)
ATTTGTGGAACAGCTCAGGACCAAG
LOC_Os09g37976
Os.55742.1.S1_at--812--5831Chr09:21895274..21895298 (25 bp)
GACCAAGTACTGAACGCCGGATTTG
LOC_Os09g37976
Os.55742.1.S1_at--308--10771Chr09:21895252..21895276 (25 bp)
TTGATGAATCCGGTACTGTACGTCC
LOC_Os09g37976
Os.55742.1.S1_at--228--7851Chr09:21895241..21895265 (25 bp)
GGTACTGTACGTCCATGTGTCCTCT
LOC_Os09g37976
Os.55742.1.S1_at--67--7151Chr09:21895215..21895239 (25 bp)
GTCTCTATACGTTTCCTGTTTTCAG
LOC_Os09g37976
Os.55742.1.S1_at--1137--3831Chr09:21895200..21895224 (25 bp)
CTGTTTTCAGCACGCGACGAAGTTA
LOC_Os09g37976
Os.55742.1.S1_at--508--9751Chr09:21895177..21895201 (25 bp)
TAATTAGGCAGTGGCTACTGCTCCG
LOC_Os09g37976
Os.55742.1.S1_at--78--1991Chr09:21895161..21895185 (25 bp)
ACTGCTCCGGTGTTCAGTCTTGACA
LOC_Os09g37976
Os.55742.1.S1_at--792--1151Chr09:21895146..21895170 (25 bp)
AGTCTTGACACGTGAATAGTCTCTA
LOC_Os09g37976
Os.55742.1.S1_at--375--5411Chr09:21895084..21895108 (25 bp)
GAAGCTGAAACTACTTGTATGCAAT
NONE
Target Sequence 
ACGTGTCGCCGGAATTTGTGGAACAGCTCAGGACCAAGTACTGAACGCCGGATTTGATGAATCCGGTACTGTACGTCCAT
GTGTCCTCTCGTCTCTATACGTTTCCTGTTTTCAGCACGCGACGAAGTTAATTAGGCAGTGGCTACTGCTCCGGTGTTCA
GTCTTGACACGTGAATAGTCTCTAAACGAAATAATTAATCGAAACCATACTGTAATTAGCTGAAGCTGAAACTACTTGTA
TGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis