Browse Element(s) Details


Os.57443.1.S1_x_at

Description gb:D29711.1
DB_XREF= gi:473985
TID=Os.57443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57443 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to high mobility group protein gene
DEF=Rice mRNA, partial homologous to high mobility group protein gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3791011/11HMG1/2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57443.1.S1_x_at--1154--8051Chr09:21856798..21856822 (25 bp)
GGAGAAGGACCCGAACAAGCCGAAG
LOC_Os09g37910
Os.57443.1.S1_x_at--146--5951Chr09:21856799..21856823 (25 bp)
GAGAAGGACCCGAACAAGCCGAAGA
LOC_Os09g37910
Os.57443.1.S1_x_at--52--1451Chr09:21856800..21856824 (25 bp)
AGAAGGACCCGAACAAGCCGAAGAG
LOC_Os09g37910
Os.57443.1.S1_x_at--1103--6191Chr09:21856804..21856828 (25 bp)
GGACCCGAACAAGCCGAAGAGGCCA
LOC_Os09g37910
Os.57443.1.S1_x_at--659--4211Chr09:21856808..21856832 (25 bp)
CCGAACAAGCCGAAGAGGCCACCGA
LOC_Os09g37910
Os.57443.1.S1_x_at--463--5511Chr09:21856810..21856834 (25 bp)
GAACAAGCCGAAGAGGCCACCGAGC
LOC_Os09g37910
Os.57443.1.S1_x_at--52--2451Chr09:21856811..21856835 (25 bp)
AACAAGCCGAAGAGGCCACCGAGCG
LOC_Os09g37910
Os.57443.1.S1_x_at--417--4511Chr09:21856816..21856840 (25 bp)
GCCGAAGAGGCCACCGAGCGCGTTC
LOC_Os09g37910
Os.57443.1.S1_x_at--1003--5351Chr09:21856819..21856843 (25 bp)
GAAGAGGCCACCGAGCGCGTTCTTC
LOC_Os09g37910
Os.57443.1.S1_x_at--650--1311Chr09:21856821..21856845 (25 bp)
AGAGGCCACCGAGCGCGTTCTTCGT
LOC_Os09g37910
Os.57443.1.S1_x_at--212--3371Chr09:21856827..21856851 (25 bp)
CACCGAGCGCGTTCTTCGTGTTCAT
LOC_Os09g37910
Target Sequence 
GGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57443.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis