Browse Element(s) Details


OsAffx.30182.1.S1_at

Description tigr:9637.m03226
TID=OsAffx.30182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3790011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30182.1.S1_at--18--6231Chr09:21851675..21851699 (25 bp)
GAGGCCATTTGTGTCGAAGGTCTGC
LOC_Os09g37900
OsAffx.30182.1.S1_at--716--10831Chr09:21851667..21851691 (25 bp)
TTGTGTCGAAGGTCTGCGGCAGTTC
LOC_Os09g37900
OsAffx.30182.1.S1_at--357--691Chr09:21851599..21851623 (25 bp)
ATGACGATGTCGGAGGTCCTCAGCA
LOC_Os09g37900
OsAffx.30182.1.S1_at--393--9251Chr09:21851583..21851607 (25 bp)
TCCTCAGCAGGGTGGCATGCGGCAT
LOC_Os09g37900
OsAffx.30182.1.S1_at--1030--8251Chr09:21851323..21851506 (25 bp)
GGCAGCGGTGGAGGCTTTCAACAAT
LOC_Os09g37900
OsAffx.30182.1.S1_at--525--4391Chr09:21851295..21851319 (25 bp)
GCCAATACTGGCGATATGCTGATGA
LOC_Os09g37900
OsAffx.30182.1.S1_at--378--1311Chr09:21851249..21851273 (25 bp)
AGAGGGCCAACCTCGGTGCCGGCCA
LOC_Os09g37900
OsAffx.30182.1.S1_at--313--954Chr11:11693957..11693976 (20 bp)
AGGAACGATGTCTTCGCGCGTGGAA
NONE
OsAffx.30182.1.S1_at--573--4132Chr09:21851043..21851067 (25 bp)
CGCGTGGAATCCTCGGCGGTGAAAT
LOC_Os09g37900
OsAffx.30182.1.S1_at--372--4152Chr04:9029341..9029360 (20 bp)
CGCGGATGGACGGTTCAGATCAATT
NONE
OsAffx.30182.1.S1_at--1047--7972Chr04:9029367..9029391 (25 bp)
GGATGATTTGACCTGTAGCATTGGA
NONE
Target Sequence 
GAGGCCATTTGTGTCGAAGGTCTGCGGCAGTTCTGGGATGGCTGGGGAGGCAGGAGTGCATGTTGGGGAGGAGACGATGA
CGATGTCGGAGGTCCTCAGCAGGGTGGCATGCGGCATCGGTGGAGTTCGGCGGCGCCGGATGGGGAAGACCACAGCTTCG
GCGGTGGCTGGGGAAGACATCGGCTCCGACGGGGGCAGCGGTGGAGGCTTTCAACAATGGGGCCAATACTGGCGATATGC
TGATGATGATGAAGTGGCAAATGGGGAAGAGGGCCAACCTCGGTGCCGGCCATCGGTGGAGTGCACGCCGGTGTCGGTGG
CGGCGGAAGGGGCTGAGGTCGGCTCCGGCGAGGATGCGGCGAAGTGGCGGCAGCGGGGAGGAGCTCCGGCGAGGACGCGG
GGAGGAGGAGGAGCGAGCGAGGAGAAGAAGCGCGGTCTTCGCGGCCGCGGGTGGAGGAGGAACGATGTCTTCGCGCGTGG
AATCCTCGGCGGTGAAATCGTGCGGTGGAGAAAACTTGCGCGCGGATGGACGGTTCAGATCAATTTGGATGATTTGACCT
GTAGCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis