Browse Element(s) Details


Os.16852.1.S1_at

Description gb:AK066732.1
DB_XREF= gi:32976750
TID=Os.16852.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033013G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077L22, full insert sequence.
FL= gb:AK073242.1 gb:AK066732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3786011/11Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os02g492701/11Proliferating-cell nucleolar antigen p120, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16852.1.S1_at--832--2432Chr09:21832372..21832396 (25 bp)
AAAAGCAGCCTGTGTCTGCTAAAAT
LOC_Os09g37860
Os.16852.1.S1_at--558--2531Chr09:21832403..21832427 (25 bp)
AACTGTTCCCAAGAGAACATCAGGA
LOC_Os09g37860
Os.16852.1.S1_at--806--5091Chr09:21832628..21832652 (25 bp)
GCACGGGTGAAGGAACTCTAGCTGT
LOC_Os09g37860
Os.16852.1.S1_at--1046--8951Chr09:21832669..21832693 (25 bp)
TGAAATTTGATAACCCCATGAGGGA
LOC_Os09g37860
Os.16852.1.S1_at--1045--8951Chr09:21832741..21832765 (25 bp)
TGAAATTTGATAACCTACATGCGGG
LOC_Os09g37860
Os.16852.1.S1_at--647--2391Chr09:21832787..21832811 (25 bp)
AAACACAGTTTTGCCGTTGGTTATG
LOC_Os09g37860
Os.16852.1.S1_at--1002--9151Chr09:21832798..21832822 (25 bp)
TGCCGTTGGTTATGTTCGTGGTGAA
LOC_Os09g37860
Os.16852.1.S1_at--557--7391Chr09:21832847..21832871 (25 bp)
GTGATCGTGTGTAATTTTACCCCTT
LOC_Os09g37860
Os.16852.1.S1_at--635--5631Chr09:21832912..21832936 (25 bp)
GACACTAACGCAAACTCTCAGAGAT
LOC_Os09g37860
Os.16852.1.S1_at--943--6531Chr09:21832972..21832996 (25 bp)
GATTTACTTCATCGATCATGTTGCC
LOC_Os09g37860
Os.16852.1.S1_at--38--9631Chr09:21832987..21833011 (25 bp)
TCATGTTGCCTTCGCGTGCTGATTG
LOC_Os09g37860
Target Sequence 
AAAAGCAGCCTGTGTCTGCTAAAATTAAAAAAACTGTTCCCAAGAGAACATCAGGANCCAAAGAAAAGAAGCCAGATACT
GACCANAGGAGGGAAGAGGAAAAGGAACTGGATGGTTAGGCGAGAATGGGAAGCTTATAAGAAGTCGAGGAGTNAAAAAG
GTATGAAAAGCACGGGTGAAGGAACTCTAGCTGTAGACNAATTATTGCAGTGAAATTTGATAACCCCATGAGGGAAGATG
TTTAAAAGGAGTAACNAAACTCTAGCCGTAGACNAACTGCAGTGAAATTTGATAACCTACATGCGGGGAAGATGTTCAAG
AAGAGACNAAACACAGTTTTGCCGTTGGTTATGTTCGTGGTGAAGGAAAAAAATTTGTTGTACTAGAAGTGATCGTGTGT
AATTTTACCCCTTTTCCGTCTTGGTTTAATGTATCAATAACTTATTTTGTCATGACACTAACGCAAACTCTCAGAGATGA
GTGTTATGAACATACGAGGGGAGAGAGAGATGTGATTTACTTCATCGATCATGTTGCCTTCGCGTGCTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis