Browse Element(s) Details


OsAffx.30180.1.S1_at

Description tigr:9637.m03219
TID=OsAffx.30180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-locus receptor-like kinase RLK11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g378401/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30180.1.S1_at--825--10252Chr11:271309..271333 (25 bp)
TTTGCTGGATGCTGAAATGAGACCC
NONE
OsAffx.30180.1.S1_at--370--7491NONE
GTGGGAACATACTCTTCCACAGGAT
NONE
OsAffx.30180.1.S1_at--926--9211Chr09:21805256..21805280 (25 bp)
TCCACAGGATGGTGCCGTTCGGTGA
NONE
OsAffx.30180.1.S1_at--550--3531Chr09:21805337..21805361 (25 bp)
CATCGTCGGTGATGTTGGTCGACCA
NONE
OsAffx.30180.1.S1_at--507--7171Chr09:21805420..21805444 (25 bp)
GTCGGCGCAGACGAACTAGTGTTTG
NONE
OsAffx.30180.1.S1_at--388--6792Chr09:21815435..21815459 (25 bp)
GTTTGTGACCGGAGTTCCTCGGTCG
NONE
OsAffx.30180.1.S1_at--253--1733Chr09:21819730..21819754 (25 bp)
ACCATATGCCGAGGTACATCTTCTC
NONE
OsAffx.30180.1.S1_at--638--4231Chr09:21805510..21805534 (25 bp)
CCGAGGTACATCTTCTCCGGAGTGG
NONE
OsAffx.30180.1.S1_at--522--2211Chr09:21805618..21805642 (25 bp)
ACAAGCCGGTCGTCGGATGCACATG
NONE
OsAffx.30180.1.S1_at--969--5972Chr09:21805659..21805683 (25 bp)
GAGAACACTGGTGATGCAGGCTAAA
NONE
OsAffx.30180.1.S1_at--826--911Chr09:21805676..21805700 (25 bp)
AGGCTAAAGCCGCAGCTGATCGATC
NONE
Target Sequence 
TTTGCTGGATGCTGAAATGAGACCCAAAATAGCAGATTTTGCAAAAGGCGAATACCAAAAGAGTTGTGGGAACATACTCT
TCCACAGGATGGTGCCGTTCGGTGACCGGATGACGAGGTTGCCGGTGTTCAGGAGCACCGCCGTGGAGCCGGAGCCCGCT
GCATCGTCGGTGATGTTGGTCGACCAGCGGACGCGGCCGTCAGCGTCAGACAAGACAAGGTTGGAGGAGTTGGTAAGCGA
CAGCGTCGGCGCAGACGAACTAGTGTTTGTGACCGGAGTTCCTCGGTCGGCGACCCACACCACCGTGCGCTGGGGGATGT
CGTTGTACCATATGCCGAGGTACATCTTCTCCGGAGTGGCAGTTGAGGGGGAGAAAAAGCTCAAGGCGAAGGCACCGCCG
TCGGAGACGAGGGTGGCGCCAGGGGAGAGCGGCTTGCCGGTGACAAGCCGGTCGTCGGATGCACATGGCGGCGGCAGGAG
GAGGAGAACACTGGTGATGCAGGCTAAAGCCGCAGCTGATCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis