Browse Element(s) Details


OsAffx.6511.1.S1_at

Description tigr:9637.m03214
TID=OsAffx.6511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3781011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6511.1.S1_at--555--2851Chr09:21783313..21783337 (25 bp)
AAGTCCTCTCATGGGACGGCGGCGA
LOC_Os09g37810
OsAffx.6511.1.S1_at--1069--5891Chr09:21783260..21783284 (25 bp)
GAGCTGCCGAAATACGAGTGCGAAC
LOC_Os09g37810
OsAffx.6511.1.S1_at--260--6111Chr09:21783245..21783269 (25 bp)
GAGTGCGAACACTACGGCTACTGCG
LOC_Os09g37810
OsAffx.6511.1.S1_at--182--1991Chr09:21783226..21783250 (25 bp)
ACTGCGGGCCATACGGTTACTGCTA
LOC_Os09g37810
OsAffx.6511.1.S1_at--548--9911Chr09:21783209..21783233 (25 bp)
TACTGCTACTATTCGGAGGTGGCTC
LOC_Os09g37810
OsAffx.6511.1.S1_at--47--991Chr09:21783142..21783166 (25 bp)
AGGAGTGGAGCAACGGCCGTTTCTC
LOC_Os09g37810
OsAffx.6511.1.S1_at--347--3951Chr09:21783031..21783055 (25 bp)
CGGACAAGTTCGTGCGCGTCAGGAA
LOC_Os09g37810
OsAffx.6511.1.S1_at--526--9951Chr09:21782951..21782975 (25 bp)
TACGCGTATGCCAACCTGGGTGGTA
LOC_Os09g37810
OsAffx.6511.1.S1_at--295--8351Chr09:21782887..21782911 (25 bp)
GGCTGGGAGAGCTGATCGACACACA
LOC_Os09g37810
OsAffx.6511.1.S1_at--815--5611Chr09:21782870..21782894 (25 bp)
GACACACAGAAAGTTGGCCCGGATT
LOC_Os09g37810
OsAffx.6511.1.S1_at--340--6831Chr09:21782617..21782818 (25 bp)
GTTTCACAGGGCTTAAGTCTCGCAG
LOC_Os09g37810
Target Sequence 
AAGTCCTCTCATGGGACGGCGGCGACGGCGCGTCGGAGTGGAGCAAGCTCGGCGAGCTGCCGAAATACGAGTGCGAACAC
TACGGCTACTGCGGGCCATACGGTTACTGCTACTATTCGGAGGTGGCTCCGACATGCGAGTGCCTCGATGGGTTTGAGCC
GAGGAGCAAGGAGGAGTGGAGCAACGGCCGTTTCTCGCGGGGATGCCGGCGAACGGAGGAGCTGCCCTGCGGCGGCGACG
GTGGCGACGCCGTCTTCTTGGAGATGCAGGGGATGCAGTTGCCGGACAAGTTCGTGCGCGTCAGGAACAAGACGTTCCAC
GAGTGCGCGGCGGAGTGCGCCGGTGACTGCTCCTGCACGGCGTACGCGTATGCCAACCTGGGTGGTAGCGGCAGCGCAAG
GAAGGACGCGACGAGGTGCTTGGTGTGGCTGGGAGAGCTGATCGACACACAGAAAGTTGGCCCGGATTGGGTGCCTTGGG
GCATAGTTGGTGGTGAGACGCTTTATCTCAAAGCTGCAGGTTTCACAGGGCTTAAGTCTCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis