Browse Element(s) Details


OsAffx.6509.1.S1_at

Description tigr:9637.m03210
TID=OsAffx.6509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3777011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6509.1.S1_at--510--7491Chr09:21759353..21759377 (25 bp)
GTGGGACCATGCACTAGGCACGCGA
LOC_Os09g37770
OsAffx.6509.1.S1_at--943--3691Chr09:21759340..21759364 (25 bp)
CTAGGCACGCGAGGTAGTAATGGAT
LOC_Os09g37770
OsAffx.6509.1.S1_at--222--191Chr09:21759290..21759314 (25 bp)
ATTTGGACACTGCTCGTTTTGGGTC
LOC_Os09g37770
OsAffx.6509.1.S1_at--969--5611Chr09:21759285..21759309 (25 bp)
GACACTGCTCGTTTTGGGTCGTTTC
LOC_Os09g37770
OsAffx.6509.1.S1_at--129--10371Chr09:21759274..21759298 (25 bp)
TTTTGGGTCGTTTCCGGCGATAGAG
LOC_Os09g37770
OsAffx.6509.1.S1_at--712--10271Chr09:21759264..21759288 (25 bp)
TTTCCGGCGATAGAGTAGTAGTACT
LOC_Os09g37770
OsAffx.6509.1.S1_at--713--1171Chr09:21759245..21759269 (25 bp)
AGTACTAGCACTCTGTTCATTTACA
LOC_Os09g37770
OsAffx.6509.1.S1_at--331--2012Chr02:29807897..29807917 (21 bp)
ACTCTGTTCATTTACATTTCAGGGC
NONE
OsAffx.6509.1.S1_at--412--171Chr09:21759221..21759245 (25 bp)
ATTTCAGGGCCTGTTCATTTACTCC
LOC_Os09g37770
OsAffx.6509.1.S1_at--142--1091Chr09:21759216..21759240 (25 bp)
AGGGCCTGTTCATTTACTCCGACGA
LOC_Os09g37770
OsAffx.6509.1.S1_at--561--8771Chr09:21759210..21759234 (25 bp)
TGTTCATTTACTCCGACGACGAGAA
LOC_Os09g37770
Target Sequence 
GTGGGACCATGCACTAGGCACGCGAGGTAGTAATGGATGGAATTGGTTCGTTGATAATCTCCGATTTGGACACTGCTCGT
TTTGGGTCGTTTCCGGCGATAGAGTAGTAGTACTAGCACTCTGTTCATTTACATTTCAGGGCCTGTTCATTTACTCCGAC
GACGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis