Browse Element(s) Details


Os.26925.1.S1_at

Description gb:AK067716.1
DB_XREF= gi:32977734
TID=Os.26925.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119O19, full insert sequence.
FL= gb:AK067716.1 gb:AK119235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3776011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26925.1.S1_at--61--5251Chr09:21751815..21751839 (25 bp)
GAATCGGATGCAGACACATACAGCT
LOC_Os09g37760
Os.26925.1.S1_at--768--4851Chr09:21751781..21751805 (25 bp)
GCTAGTAGAGAGACCTGAGATCAAC
LOC_Os09g37760
Os.26925.1.S1_at--341--6331Chr09:21751737..21751761 (25 bp)
GATGCAGAGCTCCAGTGAATTGTCC
LOC_Os09g37760
Os.26925.1.S1_at--112--5151Chr09:21751698..21751722 (25 bp)
GCAACAAGGGCCTGCTCACACTAGG
LOC_Os09g37760
Os.26925.1.S1_at--820--10091Chr09:21751677..21751701 (25 bp)
TAGGCACTAGCAACTCAGCACCAAC
LOC_Os09g37760
Os.26925.1.S1_at--636--1471Chr09:21751661..21751685 (25 bp)
AGCACCAACTGTCCAAAAACCTCGG
LOC_Os09g37760
Os.26925.1.S1_at--1069--9431Chr09:21751640..21751664 (25 bp)
TCGGATGATCCAAGTTCTGACAAGT
LOC_Os09g37760
Os.26925.1.S1_at--1060--5171Chr09:21751614..21751638 (25 bp)
GCAAGTCTTGTGAGCCATGTCGATC
LOC_Os09g37760
Os.26925.1.S1_at--468--3371Chr09:21751589..21751613 (25 bp)
CACCACGCCGTGAATTGGCATTGCA
LOC_Os09g37760
Os.26925.1.S1_at--1138--2471Chr09:21751465..21751489 (25 bp)
AACAGCGGTGAGTTCCAGTTGGAGA
LOC_Os09g37760
Os.26925.1.S1_at--77--8051Chr09:21751445..21751469 (25 bp)
GGAGATTCAACGATTCTGATGTGTA
LOC_Os09g37760
Target Sequence 
GAATCGGATGCAGACACATACAGCTGATTAGCTAGCTAGTAGAGAGACCTGAGATCAACATAGTGAATTTAACATTTGGA
TGCAGAGCTCCAGTGAATTGTCCATCATGATCACCAAGCAACAAGGGCCTGCTCACACTAGGCACTAGCAACTCAGCACC
AACTGTCCAAAAACCTCGGATGATCCAAGTTCTGACAAGTGGCAAGTCTTGTGAGCCATGTCGATCCACCACGCCGTGAA
TTGGCATTGCATTTGCGAAAACATGTTGTGTGATTGATTAGAAACATAGGATAGCATGCAGAAAATTGCAGAGTAATATG
TAGGGGGAGGTGTATTCAGCAGTGTGTAGTAACAGCGGTGAGTTCCAGTTGGAGATTCAACGATTCTGATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis