Browse Element(s) Details


OsAffx.30176.1.S1_at

Description tigr:9637.m03204
TID=OsAffx.30176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RWP-RK domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3771011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30176.1.S1_at--25--5491Chr09:21738913..21738937 (25 bp)
GAACATTTCTCAGGTCAGGAAGCAC
LOC_Os09g37710
OsAffx.30176.1.S1_at--66--5391Chr09:21738931..21738955 (25 bp)
GAAGCACCAATAGATCTCTTACAGG
LOC_Os09g37710
OsAffx.30176.1.S1_at--1029--1491Chr09:21738983..21739007 (25 bp)
AGCACATGTCTCAAAGTCCATCATC
LOC_Os09g37710
OsAffx.30176.1.S1_at--1068--7031Chr09:21739039..21739063 (25 bp)
GTAAAGGTCACTTTTGGCTCAGAAA
LOC_Os09g37710
OsAffx.30176.1.S1_at--710--2371Chr09:21739081..21739105 (25 bp)
AAACCTGAGTGTGACTTTCAAGAAC
LOC_Os09g37710
OsAffx.30176.1.S1_at--572--2811Chr09:21739261..21739285 (25 bp)
AAGATTTCAGTTCATCTGGCTGCTA
LOC_Os09g37710
OsAffx.30176.1.S1_at--1009--471Chr09:21739274..21739298 (25 bp)
ATCTGGCTGCTAGTCCAACAACAAG
LOC_Os09g37710
OsAffx.30176.1.S1_at--626--31Chr09:21739306..21739330 (25 bp)
ATTGGTCACACTGGTTTCTCATGAA
LOC_Os09g37710
OsAffx.30176.1.S1_at--145--3011Chr09:21739336..21739360 (25 bp)
AATGAGCCTCACTAGCTTGTGGGAT
LOC_Os09g37710
OsAffx.30176.1.S1_at--712--7651Chr09:21739356..21739380 (25 bp)
GGGATGTCTTCAGAAACCCAGGGAA
LOC_Os09g37710
OsAffx.30176.1.S1_at--141--7911Chr09:21739392..21739416 (25 bp)
GGTTGGCAGCCTGTGCAAGGTACCA
LOC_Os09g37710
Target Sequence 
GAACATTTCTCAGGTCAGGAAGCACCAATAGATCTCTTACAGGATGTTGCTGAAAAGGCAAATGGTGAACAGCACATGTC
TCAAAGTCCATCATCCCCCAAGCAGACTGCAAATGTAGGTATGAGAGTAAAGGTCACTTTTGGCTCAGAAAAGGTGAGGT
TCAGATTGAAACCTGAGTGTGACTTTCAAGAACTGAAGCAGGAGATATCAAAACGTCTGAGTATAGCAGACATGAATTCC
TTGATTGTAAAGTATTTGGATGACGATTCAGAATGGGTCTTGATGACATGTGATGCAGATTTACACGAGTGTTTTCATGT
TTATAAACTAGCAGATATCCAAACAATCAAGATTTCAGTTCATCTGGCTGCTAGTCCAACAACAAGGATCACCATTGGTC
ACACTGGTTTCTCATGAAGACACAATGAGCCTCACTAGCTTGTGGGATGTCTTCAGAAACCCAGGGAAACCCAAAAAATG
GTTGGCAGCCTGTGCAAGGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis