Browse Element(s) Details


OsAffx.18034.1.S1_at

Description tigr:9637.m03201
TID=OsAffx.18034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18034.1.S1_at--728--6551Chr09:21714663..21714687 (25 bp)
GATTACTCCAGCGATGTGCAGCGAC
LOC_Os09g37680
OsAffx.18034.1.S1_at--41--8551Chr09:21714571..21714595 (25 bp)
TGGAGAAGAACCACCTGTTTCGCCT
LOC_Os09g37680
OsAffx.18034.1.S1_at--907--1071Chr09:21714540..21714564 (25 bp)
AGGGAACCACCTGTTGCGCATGTGC
LOC_Os09g37680
OsAffx.18034.1.S1_at--392--5371Chr09:21714509..21714533 (25 bp)
GAAGACCGATTTCCTTACTCTGTGC
LOC_Os09g37680
OsAffx.18034.1.S1_at--893--9171Chr09:21714487..21714511 (25 bp)
TGCCGTTCCGATGTTTTTTCTGTAT
LOC_Os09g37680
OsAffx.18034.1.S1_at--181--2391Chr09:21714417..21714441 (25 bp)
AAACATGTCACTCACGATCGTCTGA
LOC_Os09g37680
OsAffx.18034.1.S1_at--174--6211Chr09:21714386..21714410 (25 bp)
GAGGCATTCTCGCAGGCATCTGGTT
LOC_Os09g37680
OsAffx.18034.1.S1_at--202--6651Chr09:21714364..21714388 (25 bp)
GTTGTTTCTGCTTCCATTTCTGATC
LOC_Os09g37680
OsAffx.18034.1.S1_at--565--8851Chr09:21714344..21714368 (25 bp)
TGATCCTTGGACATGTATACTTCTC
LOC_Os09g37680
OsAffx.18034.1.S1_at--828--9291Chr09:21714311..21714335 (25 bp)
TCCGCGTCCGTGTCTTGAGAAACAA
LOC_Os09g37680
OsAffx.18034.1.S1_at--245--2811Chr09:21714219..21714243 (25 bp)
AAGATCAAAGCTTCCGTTTCTCTGA
LOC_Os09g37680
Target Sequence 
GATTACTCCAGCGATGTGCAGCGACGGGATGTCCCTCGACATGAGTCTGCTGATGGTTCAGAGATACATGACGAGCACCA
TGTCATTATTACTGGAGAAGAACCACCTGTTTCGCCTGTTCCAAGGGAACCACCTGTTGCGCATGTGCGCAATCGAAGAC
CGATTTCCTTACTCTGTGCCGTTCCGATGTTTTTTCTGTATGGAGCATACCATTTTACGATTGGGGGATCAGCATTTGGA
ATAGACAAACATGTCACTCACGATCGTCTGATGGCCGGAGGCATTCTCGCAGGCATCTGGTTGTTTCTGCTTCCATTTCT
GATCCTTGGACATGTATACTTCTCCCACCGTATCCGCGTCCGTGTCTTGAGAAACAATGCACCATCGGCAGGAGAAGCTC
AAGTCCCCGCAACTGACGTACAAGACGAAGGCTACTTCCCTCGCAAGATCAAAGCTTCCGTTTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis