Browse Element(s) Details


Os.54373.1.S1_at

Description gb:AK103727.1
DB_XREF= gi:32988936
TID=Os.54373.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138D21, full insert sequence.
FL= gb:AK103727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3770011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54373.1.S1_at--769--10091Chr09:21729667..21729691 (25 bp)
TAGGCTGCAGGCTTTCTTGAGAAAT
LOC_Os09g37700
Os.54373.1.S1_at--1061--231Chr09:21729715..21729819 (25 bp)
ATATATCCACATGCTTCGGTCTTTG
LOC_Os09g37700
Os.54373.1.S1_at--154--3691Chr09:21729815..21729839 (25 bp)
CTTTGTCATCTGTTGGCCGAAGCAA
LOC_Os09g37700
Os.54373.1.S1_at--884--10591Chr09:21730133..21730157 (25 bp)
TTCTGTTAGGCATCTGGCATTTCCA
LOC_Os09g37700
Os.54373.1.S1_at--608--5571Chr09:21730176..21730200 (25 bp)
GAAAGTTCAGCCATGTCACGGCATA
LOC_Os09g37700
Os.54373.1.S1_at--101--6751Chr09:21730216..21730240 (25 bp)
GTTCATTCTGAAATCTTCCCAGCTG
LOC_Os09g37700
Os.54373.1.S1_at--750--10451Chr09:21730264..21730288 (25 bp)
TTAGCATGTGTTGCCTTTGTGACAA
LOC_Os09g37700
Os.54373.1.S1_at--1081--10411Chr09:21730297..21730321 (25 bp)
TTATATCTGCCAACTGATGCTCTCT
LOC_Os09g37700
Os.54373.1.S1_at--616--7331Chr09:21730354..21730378 (25 bp)
GTGCATTCCATTCCGTAGCCAAAGA
LOC_Os09g37700
Os.54373.1.S1_at--1159--8571Chr09:21730398..21730422 (25 bp)
TGGTTCATCACTTCATCTACTTCAA
LOC_Os09g37700
Os.54373.1.S1_at--244--4751Chr09:21730451..21730475 (25 bp)
GCTGATATTTCTTCTGCGTGCAAAA
LOC_Os09g37700
Target Sequence 
TAGGCTGCAGGCTTTCTTGAGAAATAACGAGCAATCAGGACAGGAAGAATATATCCACATGCTTCGGTCTTTGTCATCTG
TTGGCCGAAGCAAGCTTGCCATTGAGCTGGAGAACAGAGCAGTCAAGCTCTTGATTGAAGAAGGGAAAGAGCTGCAGAAG
ATGAAAGTTCTGAATGTACTGAACAAGCTTTCACCTACTGATGCTCTACCATTACCAACTCAGCCTGCTTCTGTTAGGCA
TCTGGCATTTCCACCCCGCTGACGAGAAGCTGAAAGTTCAGCCATGTCACGGCATAATAGGTGTTGAAGAAGTTCATTCT
GAAATCTTCCCAGCTGACAACCTGAATGCTATAGCATGGTTAGCATGTGTTGCCTTTGTGACAATAAGCCATTTATATCT
GCCAACTGATGCTCTCTCAGTGTATCAGAGCATATCGGCAGTGCGTAGTGTGCATTCCATTCCGTAGCCAAAGAAATGCT
CTGGATAGACGGATGGTTCATCACTTCATCTACTTCAACTAACCTGCAAATTTCATAGCCCCCTGTGCTGATATTTCTTC
TGCGTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis