Browse Element(s) Details


OsAffx.18035.1.S1_at

Description tigr:9637.m03205
TID=OsAffx.18035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=114721-113936
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3772011/11RNA recognition motif, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18035.1.S1_at--421--9731Chr09:21742785..21742809 (25 bp)
TCAAGGACCGGGACTCCCGCCGCAG
LOC_Os09g37720
OsAffx.18035.1.S1_at--685--4231Chr09:21742704..21742728 (25 bp)
CCGAGATGCACGGCAAGGTCCTCAA
LOC_Os09g37720
OsAffx.18035.1.S1_at--1049--5591Chr09:21742603..21742627 (25 bp)
GACAAGTCCCGCTGCTACGAGTGCG
LOC_Os09g37720
OsAffx.18035.1.S1_at--908--2851Chr09:21742600..21742624 (25 bp)
AAGTCCCGCTGCTACGAGTGCGGCG
LOC_Os09g37720
OsAffx.18035.1.S1_at--527--971Chr09:21742575..21742599 (25 bp)
AGGAGGGCCACCTCTCCTACGAGTG
LOC_Os09g37720
OsAffx.18035.1.S1_at--290--9951Chr09:21742558..21742582 (25 bp)
TACGAGTGCCCTCGCAACCAGCTCG
LOC_Os09g37720
OsAffx.18035.1.S1_at--501--891Chr09:21742522..21742546 (25 bp)
AGGCCGCCGCCGTCTAAGAAATCGC
LOC_Os09g37720
OsAffx.18035.1.S1_at--978--4231Chr09:21742513..21742537 (25 bp)
CCGTCTAAGAAATCGCGGCGCGGCG
LOC_Os09g37720
OsAffx.18035.1.S1_at--382--7591Chr09:21742446..21742470 (25 bp)
GGGCTTCCTGGCAGTCGGATGATGA
LOC_Os09g37720
OsAffx.18035.1.S1_at--592--711Chr09:21742428..21742452 (25 bp)
ATGATGAGGATAGCGCCGCGGCGTT
LOC_Os09g37720
OsAffx.18035.1.S1_at--270--2131Chr09:21742395..21742419 (25 bp)
ACAGGTGGGCGTCAGTGGTGGATAC
LOC_Os09g37720
Target Sequence 
TCAAGGACCGGGACTCCCGCCGCAGCCGGGGCGTGGCCTTCGTCCTCTTCGTCCGCCGCGAGGACGCCGCCGCCGCCGCC
GCCGAGATGCACGGCAAGGTCCTCAACGGCCGCACCCTCTCCGCCTCCATCGCGGAGGACAACGGCCGCGCAGCCGAGTT
CATCCGCCGCCGCGTCTACCGCGACAAGTCCCGCTGCTACGAGTGCGGCGAGGAGGGCCACCTCTCCTACGAGTGCCCTC
GCAACCAGCTCGGCCCCCGCGAGAGGCCGCCGCCGTCTAAGAAATCGCGGCGCGGCGGCGGCAGCGGCGGTGGTGGAGGA
GGCGGCGGAGGCGGTCGCGGGGCTTCCTGGCAGTCGGATGATGAGGATAGCGCCGCGGCGTTCGAGGACGACAGGTGGGC
GTCAGTGGTGGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis