Browse Element(s) Details


OsAffx.18033.1.S1_at

Description tigr:9637.m03199
TID=OsAffx.18033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3767010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18033.1.S1_at--662--8551Chr09:21708731..21708755 (25 bp)
TGGTTTCGCGTATTCCCCACCCGTG
LOC_Os09g37670
OsAffx.18033.1.S1_at--714--7311Chr09:21708709..21708733 (25 bp)
GTGCTCTCCTCTCATGCCAATAACT
LOC_Os09g37670
OsAffx.18033.1.S1_at--55--9631Chr09:21708698..21708722 (25 bp)
TCATGCCAATAACTCGTGCAAGGGT
LOC_Os09g37670
OsAffx.18033.1.S1_at--513--9971Chr09:21708610..21708634 (25 bp)
TACCGGCGACCTAGGAGCACCACTG
LOC_Os09g37670
OsAffx.18033.1.S1_at--840--5831Chr09:21708603..21708627 (25 bp)
GACCTAGGAGCACCACTGTCGGGAT
LOC_Os09g37670
OsAffx.18033.1.S1_at--681--8071Chr09:21708597..21708621 (25 bp)
GGAGCACCACTGTCGGGATCCACCG
LOC_Os09g37670
OsAffx.18033.1.S1_at--775--7491Chr09:21708328..21708352 (25 bp)
GTGGTGGTGGCCACTCGCATCAGAC
LOC_Os09g37670
OsAffx.18033.1.S1_at--1141--1991NONE
ACTCGCATCAGACGGCCTAGAAAAA
NONE
OsAffx.18033.1.S1_at--351--6191Chr09:21707469..21707493 (25 bp)
GAGGCAAGTGGGTCCTTCTCCCGAT
LOC_Os09g37670
OsAffx.18033.1.S1_at--671--4711Chr09:21707443..21707467 (25 bp)
GCTGGCGACGCAAGTGGGTCCTTCT
LOC_Os09g37670
OsAffx.18033.1.S1_at--495--5791Chr09:21707437..21707461 (25 bp)
GACGCAAGTGGGTCCTTCTCCCGAT
LOC_Os09g37670
Target Sequence 
TGGTTTCGCGTATTCCCCACCCGTGCTCTCCTCTCATGCCAATAACTCGTGCAAGGGTGACGGAAGGGAGAACGAGAGGA
GCAGTGGCAAGAAGGCTGCGCAGCGGGAGAGAAGAGGGGCCTACCGGCGACCTAGGAGCACCACTGTCGGGATCCACCGC
GTCGGCGCCGAGGCAACTCCACCGCGGCCCTCACTAGTGGCGCCTCCTCCCTATCCGCGCCGACCAGAGCTCGCTGGCTA
CGTCTCCCCCCCCCCGATCCGTGCAGCCCGGAGCTCTTCGGCCACGCCGGTCAGAGCTCGCCGACCACGCCGCCTCCCAA
TCCGCCGCCAGCCGAAGCTCGCCGACCGCGTTGACCGGAGCTCGCCGGTCGGCCACGCCGCCCCTCGAGGCGAGAGGGGA
GAGGTGGTGGTGGCCACTCGCATCAGACGGCCTAGAAAAAGAAGAAGGGAGAAGAAAGGAAGACGGATGCAAGAAGAAAA
GCGCGTGGAGGCAAGTGGGTCCTTCTCCCGATCGCTGGCGACGCAAGTGGGTCCTTCTCCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis