Browse Element(s) Details


Os.24834.1.S1_at

Description gb:AK067622.1
DB_XREF= gi:32977640
TID=Os.24834.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108A19, full insert sequence.
FL= gb:AK067622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3762011/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24834.1.S1_at--526--8151Chr09:21686014..21686038 (25 bp)
GGAAAGTACTTTCGCAGGTCCTGTA
LOC_Os09g37620
Os.24834.1.S1_at--189--6691Chr09:21685998..21686022 (25 bp)
GGTCCTGTATAAGCACCGTTAACAT
LOC_Os09g37620
Os.24834.1.S1_at--754--4391Chr09:21685953..21685977 (25 bp)
GCCAAGACATTGGATGCAACCCTAA
LOC_Os09g37620
Os.24834.1.S1_at--35--9011Chr09:21685907..21685931 (25 bp)
TGAATGGTTCCAGCCATATGGGCCT
LOC_Os09g37620
Os.24834.1.S1_at--355--271Chr09:21685892..21685916 (25 bp)
ATATGGGCCTGCTGATTATGCGAGT
LOC_Os09g37620
Os.24834.1.S1_at--768--4471Chr09:21685886..21685910 (25 bp)
GCCTGCTGATTATGCGAGTCTTTAC
LOC_Os09g37620
Os.24834.1.S1_at--295--5711Chr09:21685857..21685881 (25 bp)
GACTACCCTACAAGTATATTCATAG
LOC_Os09g37620
Os.24834.1.S1_at--161--9911Chr09:21685818..21685842 (25 bp)
TACTGCCTCCAGGATCCTACTGATT
LOC_Os09g37620
Os.24834.1.S1_at--489--451Chr09:21685736..21685760 (25 bp)
ATCTACCATGTTCTTTACACACTTC
LOC_Os09g37620
Os.24834.1.S1_at--103--5211Chr09:21685658..21685682 (25 bp)
GAATTTATGCTTGTACTTCAGTTAA
LOC_Os09g37620
Os.24834.1.S1_at--825--351Chr09:21685623..21685647 (25 bp)
ATCTACCTAAAGTCCAAAACATTTG
LOC_Os09g37620
Target Sequence 
GGAAAGTACTTTCGCAGGTCCTGTATAAGCACCGTTAACATTTGGTTTAACNATATCTTATGCCAAGACATTGGATGCAA
CCCTAAAAGGAAGAAAGGAGTNCTNGCTGAATGGTTCCAGCCATATGGGCCTGCTGATTATGCGAGTCTTTACTGNCGAC
TACCCTACAAGTATATTCATAGGAAAAGAACACAAGTACTGCCTCCAGGATCCTACTGATTGATTAGAAAGGTTTTATAT
CTTTCAAGTTTGTTGTTATCATANCAATATAAAATAGNATCTACCATGTTCTTTACACACTTCTACTTTCAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGNNTTAGTTCTCAATTTATGTGAATTTATGCTTGTACTTCAGTTAATATCATGTAAATCTA
CCTAAAGTCCAAAACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis