Browse Element(s) Details


Os.5985.1.S1_at

Description gb:AK060664.1
DB_XREF= gi:32970682
TID=Os.5985.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B10, full insert sequence.
FL= gb:AK060664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3760011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5985.1.S1_at--708--411Chr09:21678982..21679006 (25 bp)
ATCATGTGTGGCTGCAGCTCCTACA
LOC_Os09g37600
Os.5985.1.S1_at--1064--2171Chr09:21679004..21679140 (25 bp)
ACACTTGGCAGCTGGATTGTCAACC
LOC_Os09g37600
Os.5985.1.S1_at--850--931Chr09:21679147..21679171 (25 bp)
AGGAATAAGCTCATCGTTCTGCCCA
LOC_Os09g37600
Os.5985.1.S1_at--434--9611Chr09:21679223..21679247 (25 bp)
TCATCTTGCGAAAGCACGGCGTGCT
LOC_Os09g37600
Os.5985.1.S1_at--217--1951Chr09:21679238..21679262 (25 bp)
ACGGCGTGCTCGTATGCAGGGTACA
LOC_Os09g37600
Os.5985.1.S1_at--966--5011Chr09:21679253..21679277 (25 bp)
GCAGGGTACACCAATAGCACATCTT
LOC_Os09g37600
Os.5985.1.S1_at--1031--3011Chr09:21679418..21679439 (22 bp)
AATGCTGCTGCGATGTCTCCAATGG
LOC_Os09g37600
Os.5985.1.S1_at--394--10531Chr09:21679463..21679487 (25 bp)
TTCAGGCTGGCATCAACGTGGTTGA
LOC_Os09g37600
Os.5985.1.S1_at--865--7471Chr09:21679528..21679552 (25 bp)
GTGTGTAAGCTTCCTCAATCATGTT
LOC_Os09g37600
Os.5985.1.S1_at--980--7271Chr09:21679582..21679606 (25 bp)
GTGCCTGGACTACTGATTTCGTGGT
LOC_Os09g37600
Os.5985.1.S1_at--803--8751Chr09:21679732..21679756 (25 bp)
TGTACTGTCGAACTCTTGCAAAGGT
LOC_Os09g37600
Target Sequence 
ATCATGTGTGGCTGCAGCTCCTACACTTGGCAGCTGGATTGTCAACCAACACAAGGAATAAGCTCATCGTTCTGCCCAGC
TTCAAAATGTGGAGATATGTTCCTCGGGAACACGACCACATCGCCGACATCATCTTGCGAAAGCACGGCGTGCTCGTATG
CAGGGTACACCAATAGCACATCTTTCACCATCCTTGCCAATCTTACCACCAGTTNTACATGCAATGCTGCTGCGATGTCT
CCAATGGCGCAGCAGGCTCACTCATCGGCGTTCAGGCTGGCATCAACGTGGTTGAGATGGACTGAGCTGATCGTTNGTCT
TCATGTCATTTTCTTGTGTGTAAGCTTCCTCAATCATGTTTGAGGAGCATTTCCATTCTTGTTTTCTCAGTGCCTGGACT
ACTGATTTCGTGGTCTCATGTTGTGAGTAATCTGGGCAGTGTAAGTGTGGACTTAATAAGTAGCTGATTGGACGTGTAAG
TGTGGATGGACACCAGGGGAACACATGTTTTTGTGTTAGAATGTAGATCAGGAGACATTTGTACTGTCGAACTCTTGCAA
AGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis