Browse Element(s) Details


OsAffx.18029.1.S1_at

Description tigr:9637.m03187
TID=OsAffx.18029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18029.1.S1_at--124--1611Chr09:21651523..21651547 (25 bp)
AGCTGCAGAGGCTCCGAGCGTCGTC
LOC_Os09g37560
OsAffx.18029.1.S1_at--680--8091Chr09:21651777..21651801 (25 bp)
GGACGTCGTTGTTCGCCAGCACGGA
LOC_Os09g37560
OsAffx.18029.1.S1_at--217--10791Chr09:21651785..21651809 (25 bp)
TTGTTCGCCAGCACGGAGGCGCAGC
LOC_Os09g37560
OsAffx.18029.1.S1_at--48--8331Chr09:21651810..21651834 (25 bp)
GGCTCTTGCGCTGCTTGACGAAGGT
LOC_Os09g37560
OsAffx.18029.1.S1_at--1015--10691Chr09:21651815..21651839 (25 bp)
TTGCGCTGCTTGACGAAGGTGACCA
LOC_Os09g37560
OsAffx.18029.1.S1_at--879--5311Chr09:21651829..21651853 (25 bp)
GAAGGTGACCAGGAACGCGTCGAAC
LOC_Os09g37560
OsAffx.18029.1.S1_at--121--5171Chr09:21651876..21651900 (25 bp)
GCAAGCGTTCGCTGGCGGCTCAAAA
LOC_Os09g37560
OsAffx.18029.1.S1_at--1129--10611Chr09:21651883..21651907 (25 bp)
TTCGCTGGCGGCTCAAAACGAGACG
LOC_Os09g37560
OsAffx.18029.1.S1_at--579--3611Chr09:21651925..21651949 (25 bp)
CTTGTCGGAGGCAATGGCCGCCACC
LOC_Os09g37560
OsAffx.18029.1.S1_at--998--4591Chr09:21651971..21651995 (25 bp)
GCGACATCTTTGTACGGAAGAATCG
LOC_Os09g37560
OsAffx.18029.1.S1_at--43--8751Chr09:21651981..21652005 (25 bp)
TGTACGGAAGAATCGTGGACACGAA
LOC_Os09g37560
Target Sequence 
AGCTGCAGAGGCTCCGAGCGTCGTCGTGCTCCTCCCCGGCGGCGTCGGCGCTCGTGGCGCTCGGCGGTGCGTACGGCCGC
GTCGAGGAGCTCGTCCGCCTCCCCTCCACCACCAGCAGCCGCCGCGACGGCGACGACGCGCCGTGGAGGAGAGCCGCGGA
GGAGGAGGCGCTCGACGCGTCCGTTCGCCGCGGACGCCGTCGCGTCCCCCAAACAGCACGTCCGCGCGGCGCCGGAGACC
ACGAGACGCCGCCGGGACGTCGTTGTTCGCCAGCACGGAGGCGCAGCGGCTCTTGCGCTGCTTGACGAAGGTGACCAGGA
ACGCGTCGAACGCCAAGAAGAAGGTCGTGGCCGGCAAGCGTTCGCTGGCGGCTCAAAACGAGACGCCGCCGGCGGTGAAG
GCCTTGTCGGAGGCAATGGCCGCCACCGTGGCCGTCCTGCGGGGCGTGGCGACATCTTTGTACGGAAGAATCGTGGACAC
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis