Browse Element(s) Details


OsAffx.18031.1.S1_at

Description tigr:9637.m03191
TID=OsAffx.18031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F5M15.13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3759011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18031.1.S1_at--205--8211Chr09:21672764..21672788 (25 bp)
GGAATTGACTCCATTCTTGGCACAC
LOC_Os09g37590
OsAffx.18031.1.S1_at--602--10551Chr09:21672777..21672801 (25 bp)
TTCTTGGCACACTCATCTCGCATGG
LOC_Os09g37590
OsAffx.18031.1.S1_at--802--3211Chr09:21672854..21672878 (25 bp)
CAACGGTAACATGGCCAAAATTCTT
LOC_Os09g37590
OsAffx.18031.1.S1_at--865--2851Chr09:21673005..21673029 (25 bp)
AAGTGCTAAACAGCTCTATCCCTTA
LOC_Os09g37590
OsAffx.18031.1.S1_at--576--191Chr09:21673048..21673072 (25 bp)
ATTTCATGGGATGCATTCTCCTCAC
LOC_Os09g37590
OsAffx.18031.1.S1_at--645--6331Chr09:21673057..21673081 (25 bp)
GATGCATTCTCCTCACAGGTACAAA
LOC_Os09g37590
OsAffx.18031.1.S1_at--852--8051Chr09:21673102..21673126 (25 bp)
GGAGAGCCCATGGAAATTACGCCTG
LOC_Os09g37590
OsAffx.18031.1.S1_at--467--6151Chr09:21673130..21673154 (25 bp)
GAGGTGAATTCCATGCCAACCCTGC
LOC_Os09g37590
OsAffx.18031.1.S1_at--601--2611Chr09:21673147..21673171 (25 bp)
AACCCTGCTGCCTGTATATGCGAAA
LOC_Os09g37590
OsAffx.18031.1.S1_at--1162--4931Chr09:21673178..21673202 (25 bp)
GCATAAAGTCTGTAGTCGGATCGGA
LOC_Os09g37590
OsAffx.18031.1.S1_at--1110--8611Chr09:21673257..21673281 (25 bp)
TGGTGGGCCAACATATCCTATCTAT
LOC_Os09g37590
Target Sequence 
GGAATTGACTCCATTCTTGGCACACTCATCTCGCATGGCGGCAATTGATTTTATTGTTTGTGATGGAAGTGATGCTTTTG
TAACTAACAACAACGGTAACATGGCCAAAATTCTTGTTGGGCGAAGGAGATATTTTGGCCACAAGAGAACAATCAGGCCA
AGTGCTAAACAGCTCTATCCCTTATTTATGAATAGGTCAAATATTTCATGGGATGCATTCTCCTCACAGGTACAAACAAT
ACAGAAAGGATTCATTGGAGAGCCCATGGAAATTACGCCTGGAAGAGGTGAATTCCATGCCAACCCTGCTGCCTGTATAT
GCGAAAAGACCGGCATAAAGTCTGTAGTCGGATCGGATTCCAGAAGTAACCGAGAAACTGTTAACAGCACTGAAATAAGT
AACAAACCTATTGGTGGGCCAACATATCCTATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis