Browse Element(s) Details


Os.13921.2.S1_a_at

Description gb:CR287093
DB_XREF= gi:44673659
DB_XREF=CR287093
CLONE=p454h03p3
TID=Os.13921.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13921 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181367.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3761011/11MATE efflux protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13921.2.S1_a_at--468--6291Chr09:21686720..21686744 (25 bp)
GATGATTCCATCATTAAAGAAGCTG
LOC_Os09g37610
Os.13921.2.S1_a_at--436--5411Chr09:21686738..21686762 (25 bp)
GAAGCTGAACCTCTTGGATTTCTTG
LOC_Os09g37610
Os.13921.2.S1_a_at--531--191Chr09:21686755..21686779 (25 bp)
ATTTCTTGAGAATAATGCTGCCTTC
LOC_Os09g37610
Os.13921.2.S1_a_at--794--9311Chr09:21686781..21686805 (25 bp)
TCAACCTTATCATAAAACCCCTCTG
LOC_Os09g37610
Os.13921.2.S1_a_at--364--2431Chr09:21686794..21686818 (25 bp)
AAAACCCCTCTGGTAGCATTGCAAT
LOC_Os09g37610
Os.13921.2.S1_a_at--921--5151Chr09:21686814..21686838 (25 bp)
GCAATCAAGCAAGACGACATGGCAA
LOC_Os09g37610
Os.13921.2.S1_a_at--1000--5391Chr09:21686843..21686867 (25 bp)
GAAGCTGTAGTCAGGAACCATCCCA
LOC_Os09g37610
Os.13921.2.S1_a_at--651--8171Chr09:21686856..21686880 (25 bp)
GGAACCATCCCATGCTTTTGTAAAG
LOC_Os09g37610
Os.13921.2.S1_a_at--346--2051Chr09:21686910..21686934 (25 bp)
ACTTTTGAGATTGCCCATCTCTGAA
LOC_Os09g37610
Os.13921.2.S1_a_at--600--231Chr09:21686952..21686976 (25 bp)
ATATTTTCAGTTTTGTGGGTTCTCA
LOC_Os09g37610
Os.13921.2.S1_a_at--914--9631Chr09:21686958..21686982 (25 bp)
TCAGTTTTGTGGGTTCTCAAGCTTA
LOC_Os09g37610
Target Sequence 
GATGATTCCATCATTAAAGAAGCTGAACCTCTTGGATTTCTTGAGAATAATGCTGCCTTCGTCAACCTTATCATAAAACC
CCTCTGGTAGCATTGCAATCAAGCAAGACGACATGGCAAAGGAGAAGCTGTAGTCAGGAACCATCCCATGCTTTTGTAAA
GGAATGCTTCGCTTGAAGTAAGTTTCAATTACTTTTGAGATTGCCCATCTCTGAAAAAGCAGATGGAAAGAAATATTTTC
AGTTTTGTGGGTTCTCAAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13921.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis