Browse Element(s) Details


OsAffx.30178.1.S1_at

Description tigr:9637.m03217
TID=OsAffx.30178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30178.1.S1_at--929--5071Chr09:21795907..21795931 (25 bp)
GCACGCTCGTCGGAATCGGGTCCAG
LOC_Os09g37830
OsAffx.30178.1.S1_at--351--7711Chr09:21795890..21795914 (25 bp)
GGGTCCAGCCCACAGGTTCAACAAT
LOC_Os09g37830
OsAffx.30178.1.S1_at--541--6731Chr09:21795875..21795899 (25 bp)
GTTCAACAATTCTGGACGCCGCCTA
LOC_Os09g37830
OsAffx.30178.1.S1_at--245--2511Chr09:21795649..21795673 (25 bp)
AACATCTTTCCGTGATTCTTTCGCT
LOC_Os09g37830
OsAffx.30178.1.S1_at--1054--111Chr09:21795635..21795659 (25 bp)
ATTCTTTCGCTTGGTGTCCTGGTGC
LOC_Os09g37830
OsAffx.30178.1.S1_at--154--3491Chr09:21795600..21795624 (25 bp)
CAGGAGGCATGGTCGCATCTCGCAT
LOC_Os09g37830
OsAffx.30178.1.S1_at--1106--8411Chr09:21795574..21795598 (25 bp)
GGCCGATGGGCATGCTCTTAAGCTT
LOC_Os09g37830
OsAffx.30178.1.S1_at--661--10491Chr09:21795557..21795581 (25 bp)
TTAAGCTTCCTCATCCCTGGCATAT
LOC_Os09g37830
OsAffx.30178.1.S1_at--973--9891Chr09:21795514..21795538 (25 bp)
TACTTTGGCAGGTTGCTATTCTCTC
LOC_Os09g37830
OsAffx.30178.1.S1_at--305--4731Chr09:21795476..21795500 (25 bp)
GCTGGGTTCATTGGGCTGTACCTAA
LOC_Os09g37830
OsAffx.30178.1.S1_at--1142--7551Chr09:21795464..21795488 (25 bp)
GGGCTGTACCTAAAGTTCTTCTACT
LOC_Os09g37830
Target Sequence 
GCACGCTCGTCGGAATCGGGTCCAGCCCACAGGTTCAACAATTCTGGACGCCGCCTACCCGTCTTCTTCCTCGGGTTCAA
CCCCACCGAGCTGCCCGTGCCCGGTACAATGAGCGGCGGAAGCTGGCGAGCACCGAGCTCCGGCGAGCGGGATCCCGCTG
TCCAAGTGTCCATCCCTCCTCAGCTCATGCTCCGCAACATCTTTCCGTGATTCTTTCGCTTGGTGTCCTGGTGCTCCTCT
TCACCAGGAGGCATGGTCGCATCTCGCATGGGCCGATGGGCATGCTCTTAAGCTTCCTCATCCCTGGCATATCCAAGCCG
CAGCAGATATTACTTTGGCAGGTTGCTATTCTCTCCTTCCTCGTTGGGGCTGGGTTCATTGGGCTGTACCTAAAGTTCTT
CTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis