Browse Element(s) Details


OsAffx.30180.3.S1_at

Description tigr:9637.m03225
TID=OsAffx.30180.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus receptor-like kinase RLK14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3789011/11D-mannose binding lectin family protein
LOC_Os09g378401/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30180.3.S1_at--579--2651Chr09:21846840..21846864 (25 bp)
AAGCCAGCAACGTTTTAATGGATGC
LOC_Os09g37890
OsAffx.30180.3.S1_at--154--8071Chr09:21846530..21846554 (25 bp)
GGAGAAGTTCCACAAGTAACATCAT
LOC_Os09g37890
OsAffx.30180.3.S1_at--101--2371Chr09:21846398..21846520 (25 bp)
AAACCTCATAATCTATGCGTGGAAC
LOC_Os09g37890
OsAffx.30180.3.S1_at--479--2351Chr09:21846357..21846381 (25 bp)
AAACCAAGGATTTGGCGGACTCATC
LOC_Os09g37890
OsAffx.30180.3.S1_at--1149--10851Chr09:21846346..21846370 (25 bp)
TTGGCGGACTCATCAATTATTGGTA
LOC_Os09g37890
OsAffx.30180.3.S1_at--222--1231Chr09:21846322..21846346 (25 bp)
AGTTGCTTACTTGATGAGGTTTTGC
LOC_Os09g37890
OsAffx.30180.3.S1_at--532--6151Chr09:21846307..21846331 (25 bp)
GAGGTTTTGCTTTGCATCCATGTAG
LOC_Os09g37890
OsAffx.30180.3.S1_at--774--10732Chr09:21846296..21846320 (25 bp)
TTGCATCCATGTAGCACTATTGTGT
LOC_Os09g37890
OsAffx.30180.3.S1_at--104--4411Chr09:21846248..21846272 (25 bp)
GCCACTTATGTCATCTACTGTGTTC
LOC_Os09g37890
OsAffx.30180.3.S1_at--657--7131Chr09:21846239..21846263 (25 bp)
GTCATCTACTGTGTTCATTCTGGAG
LOC_Os09g37890
OsAffx.30180.3.S1_at--900--4191Chr09:21846178..21846202 (25 bp)
CCCGCCTACTTTGCATACAGAAGTG
LOC_Os09g37890
Target Sequence 
AAGCCAGCAACGTTTTAATGGATGCAGAGATGAGACCCAAGATAGCAGATTTTGGTATGGCAAGGATCTTTTGTGATAAT
CAACAAAATGCAAATACCCGGCGTGTTGTTGGAACATATGGTTACATGGCTCCTGAATATGCAATGGAAGGTATCTTCTC
TACTAAATCCGACGTCTACAGCTTTGGCGTGTTACTATTGGAAGTTATAACCGGTATTAGGAGAAGTTCCACAAGTAACA
TCATGGACTTTCCAAACCTCATAATCTATGCGTGGAACATGTGGAAGGAAGAGAAAACCAAGGATTTGGCGGACTCATCA
ATTATTGGTAGTTGCTTACTTGATGAGGTTTTGCTTTGCATCCATGTAGCACTATTGTGTGTTCAAGACAACCCAAATGA
CAGGCCACTTATGTCATCTACTGTGTTCATTCTGGAGAATGGGAGTAGTTCTGCACTTCCAGCCCCAAGTCGCCCCGCCT
ACTTTGCATACAGAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30180.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis