Browse Element(s) Details


OsAffx.30186.1.S1_at

Description tigr:9637.m03245
TID=OsAffx.30186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g381047/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein
LOC_Os09g38104OsAffx.30186.1.S1_at7/119+21954094..21954398hypothetical protein
LOC_Os09g38110Os.55583.1.S1_x_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38110Os.55583.1.S1_at11/119+21955911..21956856Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g38120OsAffx.18043.1.S1_at11/119+21960461..21960891hypothetical protein
LOC_Os09g38130Os.19608.1.S1_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38130Os.47814.1.A1_s_at11/119+21963065..21967738Auxin Efflux Carrier family protein, expressed
LOC_Os09g38139NANA9+21968377..21968969NA
LOC_Os09g38150OsAffx.18044.1.S1_at11/119+21972126..21973764expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30186.1.S1_at--239--3131Chr09:21953843..21953867 (25 bp)
AATTATAGCCTCCAATCAGACCGAA
NONE
OsAffx.30186.1.S1_at--231--5831Chr09:21953861..21953885 (25 bp)
GACCGAAACATGCATGATCACACGA
NONE
OsAffx.30186.1.S1_at--462--5873Chr12:5785777..5785801 (25 bp)
GAGCGTCGAGGAAAGCCGGACCCCT
NONE
OsAffx.30186.1.S1_at--854--5813Chr12:5785795..5785819 (25 bp)
GACCCCTTCGCGTACAGGTTGACGG
NONE
OsAffx.30186.1.S1_at--714--5751Chr09:21954099..21954123 (25 bp)
GACGGTGCATCTCCACGGGATGAAT
LOC_Os09g38104
OsAffx.30186.1.S1_at--307--5251Chr09:21954120..21954144 (25 bp)
GAATCAGCGGAGTCACACCGCACGA
LOC_Os09g38104
OsAffx.30186.1.S1_at--153--1831Chr09:21954175..21954199 (25 bp)
ACGCTCGAGAGGATTGGTTGTACAC
LOC_Os09g38104
OsAffx.30186.1.S1_at--368--7331Chr09:21954203..21954227 (25 bp)
GTGCAGGAGCGGTGTGTTTCCACAT
LOC_Os09g38104
OsAffx.30186.1.S1_at--331--8671Chr09:21954215..21954239 (25 bp)
TGTGTTTCCACATGTTCCCATCATG
LOC_Os09g38104
OsAffx.30186.1.S1_at--763--592Chr12:5786010..5786034 (25 bp)
ATGCCCCTTGCGAGCGAACGACAGG
NONE
OsAffx.30186.1.S1_at--715--7952Chr12:5786034..5786058 (25 bp)
GGATGATTTCGGTACCGTGCGGTAC
NONE
Target Sequence 
AATTATAGCCTCCAATCAGACCGAAACATGCATGATCACACGATGGATGTGTAACTAACCAAATAAAACAAACACTAATC
TAGCACACAAGGATTAATCTCAACAGTCGATGACGAGAAGCGCGGCGGCACCGAGGACCAGATGGCTTGAGAGCGTCGAG
GAAAGCCGGACCCCTTCGCGTACAGGTTGACGGGGCCTCCTCTTCTCCCCGTCCCCCGGCTGCTGCGCCGTCGACGAGCA
GGGCAACAACGATGGCGACGGTGCATCTCCACGGGATGAATCAGCGGAGTCACACCGCACGATGCTGCGCTTCGGGGAAG
AGAGAAAGGAAAACGCTCGAGAGGATTGGTTGTACACGCGGTGCAGGAGCGGTGTGTTTCCACATGTTCCCATCATGCCC
CTTGCGAGCGAACGACAGGGATGATTTCGGTACCGTGCGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis