Browse Element(s) Details


OsAffx.3948.1.S1_at

Description tigr:9632.m02848
TID=OsAffx.3948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to wall-associated kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3006011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed
LOC_Os04g30050OsAffx.26245.1.S1_at11/114+17756474..17756988expressed protein
LOC_Os04g30060OsAffx.3948.1.S1_at11/114+17757377..17758414Protein kinase domain containing protein
LOC_Os04g30070OsAffx.14040.1.S1_at11/114+17759569..17759910hypothetical protein
LOC_Os04g30080OsAffx.20733.1.S1_x_at1/114+17763661..17763891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30090NANA4+17768135..17769452expressed protein
LOC_Os04g30100NANA4+17772449..17773222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30110OsAffx.3949.1.S1_at11/114+17774477..17775280wall-associated kinase 3, putative
LOC_Os04g30120OsAffx.16467.1.S1_at9/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.2.S1_s_at7/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.6.S1_s_at6/114+17776629..17778057hypothetical protein
LOC_Os04g30120OsAffx.3425.1.S1_at1/114+17776629..17778057hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3948.1.S1_at--965--1571Chr04:17757935..17757959 (25 bp)
AGCTAATATCCTACTTGCCGAGGGA
LOC_Os04g30060
OsAffx.3948.1.S1_at--579--5511Chr04:17757865..17757889 (25 bp)
GAAAATCAGGCTGTGCCCAAAGGCA
LOC_Os04g30060
OsAffx.3948.1.S1_at--792--6971Chr04:17757806..17757830 (25 bp)
GTACCAGCTCACATCCAAGAATGAC
LOC_Os04g30060
OsAffx.3948.1.S1_at--616--4871Chr04:17757774..17757798 (25 bp)
GCTTTGGAGTTATCCTTCTTGAGCT
LOC_Os04g30060
OsAffx.3948.1.S1_at--440--6831Chr04:17757698..17757722 (25 bp)
GTTTCAGGAGGCTATAGCACATGAT
LOC_Os04g30060
OsAffx.3948.1.S1_at--63--711Chr04:17757678..17757702 (25 bp)
ATGATACACTCCGTGAGCTCCTTGA
LOC_Os04g30060
OsAffx.3948.1.S1_at--221--711Chr04:17757628..17757652 (25 bp)
ATGAGGGTGATCTATCGTGCAGCGA
LOC_Os04g30060
OsAffx.3948.1.S1_at--738--3991Chr04:17757613..17757637 (25 bp)
CGTGCAGCGATGCTAGCGAGTCAAT
LOC_Os04g30060
OsAffx.3948.1.S1_at--825--3451Chr04:17757493..17757517 (25 bp)
CAGTCGCCATTAGTTCTTGAGGATC
LOC_Os04g30060
OsAffx.3948.1.S1_at--299--8891Chr04:17757476..17757500 (25 bp)
TGAGGATCTGAGCTTTACGGATACA
LOC_Os04g30060
OsAffx.3948.1.S1_at--366--8191Chr04:17757448..17757472 (25 bp)
GGAAGCACAGTGTCCATTTGGTACA
LOC_Os04g30060
Target Sequence 
AGCTAATATCCTACTTGCCGAGGGATTGATCGCAAAGGTGTCTGACTTTGGGTGCTCAACAATTGATGAGGAAAATCAGG
CTGTGCCCAAAGGCACTCCGGGGTATATTGATCCGGACTATCTACTCGAGTACCAGCTCACATCCAAGAATGACGTATAT
AGCTTTGGAGTTATCCTTCTTGAGCTTCTAACAGGTAAGAAGCCACTATCAAAAGAAAGGAGGAGCTTGACATCAATGTT
TCAGGAGGCTATAGCACATGATACACTCCGTGAGCTCCTTGACATTGACATAGTTGATGAAGCTAGCATGAGGGTGATCT
ATCGTGCAGCGATGCTAGCGAGTCAATGCTTAGTTGTTCCAGGTACAACAAGACCAGCAATGACGGTCGTGGCGGAGGAG
CTTCGGCGGCTTGCCCTAGCAGATGAAGTGCAGCGATGCCCACAGTCGCCATTAGTTCTTGAGGATCTGAGCTTTACGGA
TACAGGAGGAAGCACAGTGTCCATTTGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis